Gene: SGA_v2.0_scaffold376G50287
General Information
Structural Information
- Species Striga asiatica
- Gene Identifier SGA_v2.0_scaffold376G50287
- Transcript Identifier SGA_v2.0_scaffold376T50287
- Gene Type Coding gene
- Location scaffold376 : 157445-167355 : negative
Gene Family Information
- ID HOM05D001902
- #Genes/#Species 346/100
- Phylogenetic origin
- ID ORTHO05D001973
- #Genes/#Species 331/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
Descriptions
- product ATP-dependent Clp protease proteolytic subunit
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0070734 | ISO | PLAZA Integrative Orthology | histone H3-K27 methylation | Os03g0307800 |
| GO:2000014 | ISO | PLAZA Integrative Orthology | regulation of endosperm development | AT1G02580 |
| GO:0048587 | ISO | PLAZA Integrative Orthology | regulation of short-day photoperiodism, flowering | Os03g0307800 |
| GO:0045892 | ISO | PLAZA Integrative Orthology | negative regulation of transcription, DNA-templated | AT1G02580 |
| GO:0009737 | ISO | PLAZA Integrative Orthology | response to abscisic acid | AT4G02020 |
| GO:0006349 | ISO | PLAZA Integrative Orthology | regulation of gene expression by genetic imprinting | AT1G02580 |
| GO:1990110 | ISO | PLAZA Integrative Orthology | callus formation | AT4G02020 |
| GO:0009646 | ISO | PLAZA Integrative Orthology | response to absence of light | AT1G02580 |
| GO:0006342 | ISO | PLAZA Integrative Orthology | chromatin silencing | Os03g0307800 |
| GO:0009960 | ISO | PLAZA Integrative Orthology | endosperm development | AT4G02020 |
| GO:0048317 | ISO | PLAZA Integrative Orthology | seed morphogenesis | AT1G02580 |
| GO:1900055 | ISO | PLAZA Integrative Orthology | regulation of leaf senescence | AT4G02020 |
| GO:0006508 | IEA | InterPro | proteolysis |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003727 | ISO | PLAZA Integrative Orthology | single-stranded RNA binding | AT4G02020 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0043565 | ISO | PLAZA Integrative Orthology | sequence-specific DNA binding | AT1G02580 |
| GO:0004252 | IEA | InterPro | serine-type endopeptidase activity | |
| GO:0004176 | IEA | InterPro | ATP-dependent peptidase activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005677 | ISO | PLAZA Integrative Orthology | chromatin silencing complex | AT4G02020 |
| GO:0009506 | ISO | PLAZA Integrative Orthology | plasmodesma | AT4G02020 |
| GO:0005634 | ISO | PLAZA Integrative Orthology | nucleus | AT1G02580 |
| GO:0031519 | IEA | InterPro | PcG protein complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.3.3.2.1.1.4 | Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.VRN/FIS/EMF core subcomplexes.catalytic component CLF/SWN/MEA |
| 19.4.2.9.1 | Protein homeostasis.proteolysis.serine-type peptidase activities.chloroplast Clp-type protease complex.proteolytic core component ClpP1/3-6 |