Gene: AT4G02020
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G02020
- Transcript Identifier AT4G02020.1
- Gene Type Coding gene
- Location Chr4 : 886693-891743 : positive
Gene Family Information
- ID HOM05D001902
- #Genes/#Species 346/100
- Phylogenetic origin
- ID ORTHO05D001973
- #Genes/#Species 331/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT4G02020.1
- symbol SWN
- Alias EZA1,SDG10,SET DOMAIN-CONTAINING PROTEIN 10
- full_name SWINGER
- uniprot Q9ZSM8
Descriptions
- Description SET domain-containing protein
- Computational description SWINGER (SWN); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT2G23380.1); Has 5041 Blast hits to 4734 proteins in 465 species: Archae - 0; Bacteria - 399; Metazoa - 2132; Fungi - 472; Plants - 1030; Viruses - 0; Other Eukaryotes - 1008 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1900055 | IGI | Gene Ontology | regulation of leaf senescence | 1 |
| GO:0070734 | ISO | PLAZA Integrative Orthology | histone H3-K27 methylation | Os03g0307800 |
| GO:0006342 | ISO | PLAZA Integrative Orthology | chromatin silencing | Os03g0307800 |
| GO:0048587 | ISO | PLAZA Integrative Orthology | regulation of short-day photoperiodism, flowering | Os03g0307800 |
| GO:0032259 | IEA | GOA Database | methylation | |
| GO:0006325 | IEA | GOA Database | chromatin organization | |
| GO:0009737 | IGI | Gene Ontology | response to abscisic acid | 1 |
| GO:1990110 | IGI | Gene Ontology | callus formation | 2 |
| GO:0009960 | IGI | Gene Ontology | endosperm development | 3 |
| GO:0006349 | IMP | Gene Ontology | regulation of gene expression by genetic imprinting | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0008168 | IEA | GOA Database | methyltransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0003727 | IDA | Gene Ontology | single-stranded RNA binding | 6 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031519 | IEA | Gene Ontology | PcG protein complex | |
| GO:0031519 | IEA | InterPro | PcG protein complex | |
| GO:0009506 | IDA | GOA Database | plasmodesma | |
| GO:0009506 | HDA | Gene Ontology | plasmodesma | 7 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 3 |
| GO:0005677 | IDA | Gene Ontology | chromatin silencing complex | 8 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.3.3.2.1.1.4 | Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.VRN/FIS/EMF core subcomplexes.catalytic component CLF/SWN/MEA |