Gene: AT1G02580
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G02580
- Transcript Identifier AT1G02580.1
- Gene Type Coding gene
- Location Chr1 : 544796-548994 : positive
Gene Family Information
- ID HOM05D001902
- #Genes/#Species 346/100
- Phylogenetic origin
- ID ORTHO05D001973
- #Genes/#Species 331/100
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G02580.1
- symbol MEA
- Alias EMB173,EMBRYO DEFECTIVE 173,FIS1,FERTILIZATION INDEPENDENT SEED 1,SDG5,SET DOMAIN-CONTAINING PROTEIN 5
- full_name MEDEA
- uniprot O65312
Descriptions
- Description SET domain-containing protein
- Computational description MEDEA (MEA); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), SET domain (InterPro:IPR001214); BEST Arabidopsis thaliana protein match is: SET domain-containing protein (TAIR:AT4G02020.1); Has 4870 Blast hits to 4762 proteins in 465 species: Archae - 0; Bacteria - 401; Metazoa - 1924; Fungi - 484; Plants - 1009; Viruses - 0; Other Eukaryotes - 1052 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0048317 | IGI | Gene Ontology | seed morphogenesis | 1 |
| GO:0070734 | ISO | PLAZA Integrative Orthology | histone H3-K27 methylation | Os03g0307800 |
| GO:0006342 | ISO | PLAZA Integrative Orthology | chromatin silencing | Os03g0307800 |
| GO:0048587 | ISO | PLAZA Integrative Orthology | regulation of short-day photoperiodism, flowering | Os03g0307800 |
| GO:0032259 | IEA | GOA Database | methylation | |
| GO:0006349 | IMP | Gene Ontology | regulation of gene expression by genetic imprinting | 1 |
| GO:0045892 | IMP | Gene Ontology | negative regulation of transcription, DNA-templated | 2 |
| GO:0009646 | IEP | Gene Ontology | response to absence of light | 3 |
| GO:2000014 | IMP | Gene Ontology | regulation of endosperm development | 4 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0008168 | IEA | GOA Database | methyltransferase activity | |
| GO:0016740 | IEA | GOA Database | transferase activity | |
| GO:0043565 | IDA | Gene Ontology | sequence-specific DNA binding | 2 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005677 | ISO | PLAZA Integrative Orthology | chromatin silencing complex | Os03g0307800 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IDA ISM | Gene Ontology | nucleus | 5 |
| GO:0031519 | IEA | Gene Ontology | PcG protein complex |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 12.3.3.2.1.1.4 | Chromatin organisation.post-translational histone modification.histone lysine methylation.class-I histone methyltransferase activities.PRC2 histone methylation complex.VRN/FIS/EMF core subcomplexes.catalytic component CLF/SWN/MEA |