Gene: RcHm_v2.0_Chr4g0398431
General Information
Structural Information
- Species Rosa chinensis
- Gene Identifier RcHm_v2.0_Chr4g0398431
- Transcript Identifier RcHm_v2.0_Chr4g0398431
- Gene Type Coding gene
- Location RcHm_v2.0_Chr4 : 14943510-14951304 : positive
Gene Family Information
- ID HOM05D001165
- #Genes/#Species 531/98
- Phylogenetic origin
- ID ORTHO05D001347
- #Genes/#Species 426/97
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009294 | ISO | PLAZA Integrative Orthology | DNA mediated transformation | AT1G80740 |
| GO:0010154 | ISO | PLAZA Integrative Orthology | fruit development | Solyc01g006100.4 |
| GO:0045814 | ISO | PLAZA Integrative Orthology | negative regulation of gene expression, epigenetic | AT1G69770 |
| GO:0009836 | ISO | PLAZA Integrative Orthology | fruit ripening, climacteric | Solyc01g006100.4 |
| GO:0006306 | ISO | PLAZA Integrative Orthology | DNA methylation | AT1G69770 |
| GO:0006342 | ISO | PLAZA Integrative Orthology | chromatin silencing | AT1G69770 |
| GO:0010425 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine within a CNG sequence | AT1G69770 |
| GO:0010216 | ISO | PLAZA Integrative Orthology | maintenance of DNA methylation | Os10g0104900 |
| GO:0051567 | ISO | PLAZA Integrative Orthology | histone H3-K9 methylation | AT1G69770 |
| GO:0010069 | ISO | PLAZA Integrative Orthology | zygote asymmetric cytokinesis in embryo sac | AT1G69770 |
| GO:0032776 | ISO | PLAZA Integrative Orthology | DNA methylation on cytosine | Os10g0104900 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003682 | IEA | InterPro | chromatin binding | |
| GO:0008168 | IEA | InterPro | methyltransferase activity | |
| GO:0003886 | ISO | PLAZA Integrative Orthology | DNA (cytosine-5-)-methyltransferase activity | Solyc01g006100.4 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase |
| IPR043151 | Bromo adjacent homology (BAH) domain superfamily |
| IPR000953 | Chromo/chromo shadow domain |
| IPR001025 | Bromo adjacent homology (BAH) domain |
| IPR023780 | Chromo domain |
| IPR001525 | C-5 cytosine methyltransferase |
| IPR016197 | Chromo-like domain superfamily |
| Mapman id | Description |
|---|---|
| 12.5.2.4 | Chromatin organisation.DNA methylation.RNA-independent DNA methylation.DNA chromomethylase (CMT) |