Gene: Pp3c24_17170

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c24_17170
  • Transcript Identifier Pp3c24_17170V3.2
  • Gene Type Coding gene
  • Location Chr24 : 11210185-11211030 : positive

Gene Family Information

  • ID HOM05D000142
  • #Genes/#Species 2580/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c24_17170V3.2
  • pacid 32910474
  • alias Pp1s260_6V6
  • alias Phypa_34983
  • alias Phpat.024G063300
  • uniprot A0A2K1IH50

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006396
ISO
PLAZA Integrative OrthologyRNA processing AT3G53460
GO:0016553
ISO
PLAZA Integrative Orthologybase conversion or substitution editing AT4G24770
GO:0045087
ISO
PLAZA Integrative Orthologyinnate immune response AT2G37220
GO:0009737
ISO
PLAZA Integrative Orthologyresponse to abscisic acid AT2G37220
GO:0009409
ISO
PLAZA Integrative Orthologyresponse to cold AT3G53460
GO:0043489
ISO
PLAZA Integrative OrthologyRNA stabilization AT3G53460
GO:0009631
ISO
PLAZA Integrative Orthologycold acclimation AT3G53460
GO:0009451
ISO
PLAZA Integrative OrthologyRNA modification AT5G50250
GO:0008380
ISO
PLAZA Integrative OrthologyRNA splicing AT3G53460
GO:1901259
IBA
GOA Databasechloroplast rRNA processing

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008266
ISO
PLAZA Integrative Orthologypoly(U) RNA binding AT3G53460
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003729
IBA
GOA DatabasemRNA binding
GO:0003723
IEA
GOA DatabaseRNA binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010319
ISO
PLAZA Integrative Orthologystromule AT2G37220
GO:0009507
ISO
PLAZA Integrative Orthologychloroplast AT3G53460
GO:0009579
ISO
PLAZA Integrative Orthologythylakoid AT3G53460
GO:0009534
ISO
PLAZA Integrative Orthologychloroplast thylakoid AT2G37220
GO:0009941
ISO
PLAZA Integrative Orthologychloroplast envelope AT2G37220
GO:0009570
ISO
PLAZA Integrative Orthologychloroplast stroma AT3G53460
GO:0009535
IBA
GOA Databasechloroplast thylakoid membrane

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR000504 RNA recognition motif domain
Mapman id Description
35.1 not assigned.annotated