Gene: Pp3c23_5870

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c23_5870
  • Transcript Identifier Pp3c23_5870V3.1
  • Gene Type Coding gene
  • Location Chr23 : 3942512-3944700 : negative

Gene Family Information

  • ID HOM05D000530
  • #Genes/#Species 1029/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c23_5870V3.1
  • pacid 32951099
  • alias Pp1s16_2V6
  • alias Phypa_104828
  • alias Phpat.023G015200
  • uniprot A0A2K1II60

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0048589
ISO
PLAZA Integrative Orthologydevelopmental growth AT4G03190
GO:0010311
ISO
PLAZA Integrative Orthologylateral root formation AT3G62980
GO:0016036
ISO
PLAZA Integrative Orthologycellular response to phosphate starvation AT3G62980
GO:0071249
ISO
PLAZA Integrative Orthologycellular response to nitrate AT1G12820
GO:0048443
ISO
PLAZA Integrative Orthologystamen development AT3G26810
GO:0009733
ISO
PLAZA Integrative Orthologyresponse to auxin AT3G62980
GO:0006511
ISO
PLAZA Integrative Orthologyubiquitin-dependent protein catabolic process AT3G62980
GO:0048527
ISO
PLAZA Integrative Orthologylateral root development AT1G12820
GO:0045014
ISO
PLAZA Integrative Orthologycarbon catabolite repression of transcription by glucose AT4G03190
GO:0080022
ISO
PLAZA Integrative Orthologyprimary root development AT1G12820
GO:0010152
ISO
PLAZA Integrative Orthologypollen maturation AT3G26810
GO:0031146
IBA
GOA DatabaseSCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0004842
ISO
PLAZA Integrative Orthologyubiquitin-protein transferase activity AT3G62980
GO:0005515
IEA
InterProprotein binding
GO:0000822
ISO
PLAZA Integrative Orthologyinositol hexakisphosphate binding AT3G62980
GO:0038198
ISO
PLAZA Integrative Orthologyauxin receptor activity AT3G62980
GO:0010011
ISO
PLAZA Integrative Orthologyauxin binding AT3G26810

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000151
ISO
PLAZA Integrative Orthologyubiquitin ligase complex AT3G62980
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT4G03190
GO:0043224
ISO
PLAZA Integrative Orthologynuclear SCF ubiquitin ligase complex AT4G03190
GO:0019005
IBA
GOA DatabaseSCF ubiquitin ligase complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036047 F-box-like domain superfamily
IPR041567 COI1, F-box
IPR041101 Transport inhibitor response 1 domain
IPR001611 Leucine-rich repeat
IPR032675 Leucine-rich repeat domain superfamily
IPR001810 F-box domain
IPR006553 Leucine-rich repeat, cysteine-containing subtype
Mapman id Description
11.2.2.1 Phytohormone action.auxin.perception and signal transduction.substrate adaptor of SCF ubiquitin ligase (TIR1/AFB)