Gene: AT3G62980

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G62980
  • Transcript Identifier AT3G62980.1
  • Gene Type Coding gene
  • Location Chr3 : 23273479-23276181 : negative

Gene Family Information

  • ID HOM05D000530
  • #Genes/#Species 1029/95
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G62980.1
  • symbol TIR1
  • Alias AtTIR1
  • full_name TRANSPORT INHIBITOR RESPONSE 1
  • uniprot Q570C0

Descriptions

  • Description F-box/RNI-like superfamily protein
  • Computational description TRANSPORT INHIBITOR RESPONSE 1 (TIR1); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: GRR1-like protein 1 (TAIR:AT4G03190.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010152
IGI
Gene Ontologypollen maturation1
GO:0009873
IEA
GOA Databaseethylene-activated signaling pathway
GO:0009734
IEA
GOA Databaseauxin-activated signaling pathway
GO:0009734
IMP
Gene Ontologyauxin-activated signaling pathway2
GO:0007049
IEA
GOA Databasecell cycle
GO:0006952
IEA
GOA Databasedefense response
GO:0031146
IBA
Gene OntologySCF-dependent proteasomal ubiquitin-dependent protein catabolic process3
GO:0010311
IMP
Gene Ontologylateral root formation4
GO:0009733
IMP
Gene Ontologyresponse to auxin5
GO:0016036
IEP
Gene Ontologycellular response to phosphate starvation6
GO:0048443
IGI
Gene Ontologystamen development1
GO:0006511
TAS
Gene Ontologyubiquitin-dependent protein catabolic process7
GO:0016567
IEA
Gene Ontologyprotein ubiquitination

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding8
GO:0005515
IEA
InterProprotein binding
GO:0010011
IDA, IGI
Gene Ontologyauxin binding9 10
GO:0000822
IDA
Gene Ontologyinositol hexakisphosphate binding10
GO:0038198
IDA
Gene Ontologyauxin receptor activity9
GO:0004842
IC
Gene Ontologyubiquitin-protein transferase activity8

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus
GO:0019005
IDA
IBA
Gene OntologySCF ubiquitin ligase complex3 8
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0000151
IDA
Gene Ontologyubiquitin ligase complex8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR041567 COI1, F-box
IPR036047 F-box-like domain superfamily
IPR001810 F-box domain
IPR032675 Leucine-rich repeat domain superfamily
IPR041101 Transport inhibitor response 1 domain
IPR006553 Leucine-rich repeat, cysteine-containing subtype
Mapman id Description
11.2.2.1 Phytohormone action.auxin.perception and signal transduction.substrate adaptor of SCF ubiquitin ligase (TIR1/AFB)