Gene: AT1G12820
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G12820
- Transcript Identifier AT1G12820.1
- Gene Type Coding gene
- Location Chr1 : 4368879-4370780 : negative
Gene Family Information
- ID HOM05D000530
- #Genes/#Species 1029/95
- Phylogenetic origin
- ID ORTHO05D000621
- #Genes/#Species 731/95
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT1G12820.1
- symbol AFB3
- uniprot B2CST9
Descriptions
- Description auxin signaling F-box 3
- Computational description auxin signaling F-box 3 (AFB3); CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810); BEST Arabidopsis thaliana protein match is: auxin signaling F-box 2 (TAIR:AT3G26810.1); Has 2450 Blast hits to 1661 proteins in 170 species: Archae - 0; Bacteria - 4; Metazoa - 823; Fungi - 153; Plants - 1347; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009734 | ISS | Gene Ontology | auxin-activated signaling pathway | |
| GO:0016567 | IEA | Gene Ontology | protein ubiquitination | |
| GO:0010152 | IGI | Gene Ontology | pollen maturation | 1 |
| GO:0048443 | IGI | Gene Ontology | stamen development | 1 |
| GO:0048527 | IMP | Gene Ontology | lateral root development | 2 |
| GO:0071249 | IEP | Gene Ontology | cellular response to nitrate | 2 |
| GO:0080022 | IMP | Gene Ontology | primary root development | 2 |
| GO:0031146 | IBA | Gene Ontology | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000822 | ISS | Gene Ontology | inositol hexakisphosphate binding | |
| GO:0010011 | IGI ISS | Gene Ontology | auxin binding | 4 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 5 |
| GO:0005515 | IEA | InterPro | protein binding |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0019005 | ISS, IBA | Gene Ontology | SCF ubiquitin ligase complex | 3 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 11.2.2.1 | Phytohormone action.auxin.perception and signal transduction.substrate adaptor of SCF ubiquitin ligase (TIR1/AFB) |