Gene: Pp3c23_22040

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c23_22040
  • Transcript Identifier Pp3c23_22040V3.4
  • Gene Type Coding gene
  • Location Chr23 : 14542386-14546720 : positive

Gene Family Information

  • ID HOM05D000762
  • #Genes/#Species 768/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c23_22040V3.4
  • pacid 32950376
  • alias Pp1s335_77V6
  • alias Phpat.023G079600
  • alias Phypa_108866
  • uniprot A9TVI2

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic
GO:0000289
IBA
GOA Databasenuclear-transcribed mRNA poly(A) tail shortening
GO:0005986
ISO
PLAZA Integrative Orthologysucrose biosynthetic process AT3G58560
GO:0019252
ISO
PLAZA Integrative Orthologystarch biosynthetic process AT3G58560
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT3G58560

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0000175
IBA
GOA Database3'-5'-exoribonuclease activity
GO:0004535
IBA
GOA Databasepoly(A)-specific ribonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030014
IBA
GOA DatabaseCCR4-NOT complex
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005634
IBA
GOA Databasenucleus
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT3G58560
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G58560

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036691 Endonuclease/exonuclease/phosphatase superfamily
IPR005135 Endonuclease/exonuclease/phosphatase
Mapman id Description
16.4.2.1.2.1 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CCR4