Gene: AT3G58560
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G58560
- Transcript Identifier AT3G58560.1
- Gene Type Coding gene
- Location Chr3 : 21650880-21653896 : negative
Gene Family Information
- ID HOM05D000762
- #Genes/#Species 768/100
- Phylogenetic origin
- ID ORTHO05D002448
- #Genes/#Species 287/99
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT3G58560.1
- Alias AtCCR4a
- uniprot Q8W0Z9
Descriptions
- Description DNAse I-like superfamily protein
- Computational description DNAse I-like superfamily protein; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: DNAse I-like superfamily protein (TAIR:AT3G58580.1); Has 1372 Blast hits to 1328 proteins in 220 species: Archae - 0; Bacteria - 20; Metazoa - 540; Fungi - 247; Plants - 315; Viruses - 0; Other Eukaryotes - 250 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0090503 | IEA | GOA Database | RNA phosphodiester bond hydrolysis, exonucleolytic | |
| GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis | |
| GO:0000289 | IBA | Gene Ontology | nuclear-transcribed mRNA poly(A) tail shortening | 1 |
| GO:0019252 | IGI | Gene Ontology | starch biosynthetic process | 2 |
| GO:0006397 | IGI | Gene Ontology | mRNA processing | 2 |
| GO:0005986 | IGI | Gene Ontology | sucrose biosynthetic process | 2 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0004518 | IEA | GOA Database | nuclease activity | |
| GO:0004527 | IEA | GOA Database | exonuclease activity | |
| GO:0016787 | IEA | GOA Database | hydrolase activity | |
| GO:0003723 | IEA | GOA Database | RNA binding | |
| GO:0046872 | IEA | GOA Database | metal ion binding | |
| GO:0004535 | IEA | GOA Database | poly(A)-specific ribonuclease activity | |
| GO:0004535 | IBA | Gene Ontology | poly(A)-specific ribonuclease activity | 1 |
| GO:0000175 | IBA | Gene Ontology | 3'-5'-exoribonuclease activity | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | IDA | GOA Database | cytosol | |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | IBA | Gene Ontology | nucleus | 1 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IBA | Gene Ontology | cytoplasm | 1 |
| GO:0000932 | IPI | Gene Ontology | P-body | 2 |
| GO:0030014 | IBA | Gene Ontology | CCR4-NOT complex | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.4.2.1.2.1 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CCR4 |