Gene: Pp3c1_39470
General Information
Structural Information
- Species Physcomitrium patens
- Gene Identifier Pp3c1_39470
- Transcript Identifier Pp3c1_39470V3.2
- Gene Type Coding gene
- Location Chr01 : 27447291-27449010 : positive
Gene Family Information
- ID HOM05D001080
- #Genes/#Species 568/100
- Phylogenetic origin
- ID ORTHO05D001081
- #Genes/#Species 495/100
- Phylogenetic origin
Gene Duplication Information
Labels
Identifiers
- name Pp3c1_39470V3.2
- pacid 32970784
- alias Pp1s163_37V6
- alias Phpat.001G157400
- alias Phypa_110206
- uniprot A9T4E1
Descriptions
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0000463 | IBA IEA | GOA Database | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | |
| GO:0000463 | IEA | InterPro | maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003729 | ISO | PLAZA Integrative Orthology | mRNA binding | AT2G44120 |
| GO:0003723 | IBA | GOA Database | RNA binding | |
| GO:0003735 | IBA IEA | GOA Database | structural constituent of ribosome | |
| GO:0003735 | IEA | InterPro | structural constituent of ribosome |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT2G01250 |
| GO:0042788 | ISO | PLAZA Integrative Orthology | polysomal ribosome | AT2G01250 |
| GO:0005886 | ISO | PLAZA Integrative Orthology | plasma membrane | AT2G01250 |
| GO:0005773 | ISO | PLAZA Integrative Orthology | vacuole | AT2G01250 |
| GO:0005774 | ISO | PLAZA Integrative Orthology | vacuolar membrane | AT2G01250 |
| GO:0005730 | ISO | PLAZA Integrative Orthology | nucleolus | AT1G80750 |
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT1G80750 |
| GO:0005618 | ISO | PLAZA Integrative Orthology | cell wall | AT2G01250 |
| GO:0022626 | ISO | PLAZA Integrative Orthology | cytosolic ribosome | AT2G01250 |
| GO:0022625 | IBA IEA | GOA Database | cytosolic large ribosomal subunit | |
| GO:0022625 | IEA | InterPro | cytosolic large ribosomal subunit |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR012988 | Ribosomal protein L30, N-terminal |
| IPR039699 | Ribosomal protein L7/L30 |
| IPR005998 | Ribosomal protein L7, eukaryotic |
| IPR035808 | Ribosomal protein L7, eukaryotic/archaeal |
| IPR036919 | Ribosomal protein L30, ferredoxin-like fold domain superfamily |
| IPR016082 | Ribosomal protein L30, ferredoxin-like fold domain |
| Mapman id | Description |
|---|---|
| 17.1.2.1.5 | Protein biosynthesis.ribosome biogenesis.large ribosomal subunit (LSU).LSU proteome.component RPL7 |