Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Pp3c1_20310 Physcomitrium patens HOM05D006900 ORTHO05D008651 4.4e-266 921.4 740 100.0
Mapoly0078s0010 Marchantia polymorpha HOM05D006900 ORTHO05D008651 6.0e-45 186.8 536 70.9
SMO115G0152 Selaginella moellendorffii HOM05D006900 ORTHO05D008651 2.1e-34 151.8 407 82.1
Peaxi162Scf00681g00223 Petunia axillaris HOM05D006900 ORTHO05D008651 8.9e-33 146.4 110 63.6
SEGI_12330 Sequoiadendron giganteum HOM05D006900 ORTHO05D008651 8.9e-33 146.4 464 73.9
RcHm_v2.0_Chr4g0425111 Rosa chinensis HOM05D006900 ORTHO05D008651 2.6e-32 144.8 459 73.6
CSS0034541 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 5.8e-32 143.7 110 59.1
Nitab4.5_0004979g0030 Nicotiana tabacum HOM05D006900 ORTHO05D008651 5.8e-32 143.7 116 58.6
Nitab4.5_0010299g0060 Nicotiana tabacum HOM05D006900 ORTHO05D008651 5.8e-32 143.7 116 58.6
Eucgr.H04042 Eucalyptus grandis HOM05D006900 ORTHO05D008651 9.9e-32 142.9 116 57.8
Manes.03G204600 Manihot esculenta HOM05D006900 ORTHO05D008651 1.7e-31 142.1 110 60.0
ATR0693G010 Amborella trichopoda HOM05D006900 ORTHO05D008651 2.2e-31 141.7 110 59.1
AagrBONN_evm.TU.Sc2ySwM_368.516 Anthoceros agrestis HOM05D006900 ORTHO05D008651 2.2e-31 141.7 113 58.4
Thhalv10020271m.g Eutrema salsugineum HOM05D006900 ORTHO05D008651 2.2e-31 141.7 115 58.3
FAN12G3178 Fragaria x ananassa HOM05D006900 ORTHO05D008651 2.2e-31 141.7 456 72.1
Solyc04g009020.4 Solanum lycopersicum HOM05D006900 ORTHO05D008651 2.2e-31 141.7 110 60.9
Sopen04g004200 Solanum pennellii HOM05D006900 ORTHO05D008651 2.2e-31 141.7 110 60.9
BcaC05g28835 Brassica carinata HOM05D006900 ORTHO05D008651 2.9e-31 141.4 115 58.3
BolC5t33686H Brassica oleracea HOM05D006900 ORTHO05D008651 2.9e-31 141.4 115 58.3
BraA05t22092Z Brassica rapa HOM05D006900 ORTHO05D008651 2.9e-31 141.4 115 58.3
CBR_g12177 Chara braunii HOM05D006900 ORTHO05D008651 2.9e-31 141.4 142 52.1
ECA233G1261 Erigeron canadensis HOM05D006900 ORTHO05D008651 2.9e-31 141.4 116 57.8
SalBow8G4068 Salvia bowleyana HOM05D006900 ORTHO05D008651 2.9e-31 141.4 120 55.8
SGA_v2.0_scaffold104G30080 Striga asiatica HOM05D006900 ORTHO05D008651 2.9e-31 141.4 120 55.0
BcaB06g25797 Brassica carinata HOM05D006900 ORTHO05D008651 3.8e-31 141.0 115 58.3
CAN.G274.12 Capsicum annuum HOM05D006900 ORTHO05D008651 3.8e-31 141.0 116 57.8
A05p32690 Brassica napus HOM05D006900 ORTHO05D008651 4.9e-31 140.6 115 58.3
C05p49400 Brassica napus HOM05D006900 ORTHO05D008651 4.9e-31 140.6 115 58.3
TPR.G16830 Trifolium pratense HOM05D006900 ORTHO05D008651 4.9e-31 140.6 203 43.3
PGSC0003DMG400011531 Solanum tuberosum HOM05D006900 ORTHO05D008651 6.4e-31 140.2 110 60.0
Carub.0003s1679 Capsella rubella HOM05D006900 ORTHO05D008651 8.4e-31 139.8 115 57.4
Cfa015319 Carpinus fangiana HOM05D006900 ORTHO05D008651 8.4e-31 139.8 116 55.2
PGR004G2297 Punica granatum HOM05D006900 ORTHO05D008651 8.4e-31 139.8 472 71.2
AUR62016204 Chenopodium quinoa HOM05D006900 ORTHO05D008651 1.1e-30 139.4 130 54.6
FvH4_4g19660 Fragaria vesca HOM05D006900 ORTHO05D008651 1.1e-30 139.4 459 71.9
Aa31LG8G4070 Aethionema arabicum HOM05D006900 ORTHO05D008651 1.4e-30 139.0 127 53.5
AL3G30020 Arabidopsis lyrata HOM05D006900 ORTHO05D008651 1.4e-30 139.0 110 59.1
AUR62039284 Chenopodium quinoa HOM05D006900 ORTHO05D008651 1.4e-30 139.0 130 54.6
MSTRG.10150 Avicennia marina HOM05D006900 ORTHO05D008651 1.9e-30 138.7 110 58.2
Sp3g15260 Schrenkiella parvula HOM05D006900 ORTHO05D008651 1.9e-30 138.7 115 55.7
Actinidia13360 Actinidia chinensis HOM05D006900 ORTHO05D008651 2.4e-30 138.3 116 56.9
AT3G17040 Arabidopsis thaliana HOM05D006900 ORTHO05D008651 2.4e-30 138.3 115 55.7
Migut.G00056 Erythranthe guttata HOM05D006900 ORTHO05D008651 2.4e-30 138.3 110 59.1
CARHR092290 Cardamine hirsuta HOM05D006900 ORTHO05D008651 3.2e-30 137.9 110 59.1
FAN07G1219 Fragaria x ananassa HOM05D006900 ORTHO05D008651 3.2e-30 137.9 459 71.7
Glyma.07G240000 Glycine max HOM05D006900 ORTHO05D008651 3.2e-30 137.9 111 59.5
Lsat_1_v5_gn_6_18120 Lactuca sativa HOM05D006900 ORTHO05D008651 3.2e-30 137.9 110 59.1
Potri.010G145000 Populus trichocarpa HOM05D006900 ORTHO05D008651 3.2e-30 137.9 119 53.8
GSVIVG01034997001 Vitis vinifera HOM05D006900 ORTHO05D008651 3.2e-30 137.9 110 59.1
Ciclev10004521m.g Citrus clementina HOM05D006900 ORTHO05D008651 5.4e-30 137.1 110 58.2
DCAR_030472 Daucus carota HOM05D006900 ORTHO05D008651 5.4e-30 137.1 110 58.2
HanXRQChr13g0393421 Helianthus annuus HOM05D006900 ORTHO05D008651 5.4e-30 137.1 110 58.2
Nn3g21725 Nelumbo nucifera HOM05D006900 ORTHO05D008651 5.4e-30 137.1 145 49.7
unitig_748.g8700 Utricularia gibba HOM05D006900 ORTHO05D008651 5.4e-30 137.1 115 53.9
ClCG05G006560 Citrullus lanatus HOM05D006900 ORTHO05D008651 7.1e-30 136.7 459 73.0
MELO3C006715.2 Cucumis melo HOM05D006900 ORTHO05D008651 7.1e-30 136.7 459 73.2
Glyma.17G033400 Glycine max HOM05D006900 ORTHO05D008651 7.1e-30 136.7 111 59.5
Rhsim02G0004000 Rhododendron simsii HOM05D006900 ORTHO05D008651 7.1e-30 136.7 171 46.2
THA.LOC104820304 Tarenaya hassleriana HOM05D006900 ORTHO05D008651 7.1e-30 136.7 118 54.2
TWI09G0824 Tripterygium wilfordii HOM05D006900 ORTHO05D008651 7.1e-30 136.7 114 57.0
Ah.04g156910 Amaranthus hybridus HOM05D006900 ORTHO05D008651 9.3e-30 136.3 110 57.3
CsaV3_3G015170 Cucumis sativus L. HOM05D006900 ORTHO05D008651 9.3e-30 136.3 110 58.2
Duzib212G0988 Durio zibethinus HOM05D006900 ORTHO05D008651 9.3e-30 136.3 172 45.9
Lj4g0008712 Lotus japonicus HOM05D006900 ORTHO05D008651 9.3e-30 136.3 537 65.5
QL06p012004 Quercus lobata HOM05D006900 ORTHO05D008651 9.3e-30 136.3 121 53.7
Sabra10G0112000 Salix brachista HOM05D006900 ORTHO05D008651 9.3e-30 136.3 129 52.7
Atru.chr4.3007 Acer truncatum HOM05D006900 ORTHO05D008651 1.2e-29 136.0 110 57.3
CDE01G0483 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 1.2e-29 136.0 116 56.0
Lalb_Chr07g0182071 Lupinus albus HOM05D006900 ORTHO05D008651 1.2e-29 136.0 110 56.4
Sc15g0003210 Simmondsia chinensis HOM05D006900 ORTHO05D008651 1.2e-29 136.0 130 53.8
Cc03_g00870 Coffea canephora HOM05D006900 ORTHO05D008651 2.7e-29 134.8 110 58.2
EL10Ac3g05503 Beta vulgaris HOM05D006900 ORTHO05D008651 3.5e-29 134.4 133 52.6
MBI18_g32026_MAGBIO Magnolia biondii HOM05D006900 ORTHO05D008651 3.5e-29 134.4 116 54.3
Sed0008833 Sechium edule HOM05D006900 ORTHO05D008651 3.5e-29 134.4 110 59.1
TAR362G0296 Trochodendron aralioides HOM05D006900 ORTHO05D008651 3.5e-29 134.4 173 45.1
VMungo1215G0487 Vigna mungo HOM05D006900 ORTHO05D008651 3.5e-29 134.4 489 69.1
arahy.Tifrunner.gnm1.ann1.Z0RY6M Arachis hypogaea HOM05D006900 ORTHO05D008651 6.0e-29 133.7 170 43.5
Dinv15174 Davidia involucrata HOM05D006900 ORTHO05D008651 6.0e-29 133.7 110 58.2
Thecc.04G300100 Theobroma cacao HOM05D006900 ORTHO05D008651 6.0e-29 133.7 173 45.1
Lj6A690T75 Lonicera japonica HOM05D006900 ORTHO05D008651 7.8e-29 133.3 112 55.4
arahy.Tifrunner.gnm1.ann1.88EKIY Arachis hypogaea HOM05D006900 ORTHO05D008651 1.3e-28 132.5 170 42.9
CANSAT64G2951 Cannabis sativa HOM05D006900 ORTHO05D008651 1.3e-28 132.5 122 54.1
Ca_21442_v3 Cicer arietinum L. HOM05D006900 ORTHO05D008651 1.3e-28 132.5 169 42.0
Psat0s740g0280 Pisum sativum HOM05D006900 ORTHO05D008651 1.7e-28 132.1 281 32.7
Gohir.A10G171600 Gossypium hirsutum HOM05D006900 ORTHO05D008651 2.3e-28 131.7 172 44.2
Haze_01304 Corylus avellana HOM05D006900 ORTHO05D008651 3.0e-28 131.3 164 43.3
Gorai.011G199800 Gossypium raimondii HOM05D006900 ORTHO05D008651 3.0e-28 131.3 172 44.2
PSO357G0537 Papaver somniferum HOM05D006900 ORTHO05D008651 3.0e-28 131.3 143 49.7
Medtr4g122060 Medicago truncatula HOM05D006900 ORTHO05D008651 3.9e-28 131.0 110 53.6
PSO170G0176 Papaver somniferum HOM05D006900 ORTHO05D008651 3.9e-28 131.0 143 49.7
CDE12G0762 Ceratophyllum demersum HOM05D006900 ORTHO05D008651 5.1e-28 130.6 117 55.6
Gohir.D10G178700 Gossypium hirsutum HOM05D006900 ORTHO05D008651 5.1e-28 130.6 172 44.2
MD13G1154800 Malus domestica HOM05D006900 ORTHO05D008651 5.1e-28 130.6 506 67.4
Hma1.2p1_0013F.1_g008570 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 8.7e-28 129.8 234 36.3
Hma1.2p1_0013F.1_g008580 Hydrangea macrophylla HOM05D006900 ORTHO05D008651 8.7e-28 129.8 234 36.3
Prupe.1G117800 Prunus persica HOM05D006900 ORTHO05D008651 8.7e-28 129.8 199 38.7
Phvul.003G114100 Phaseolus vulgaris HOM05D006900 ORTHO05D008651 1.1e-27 129.4 147 46.3
Os03g0308800 Oryza sativa ssp. japonica HOM05D006900 ORTHO05D008651 1.9e-27 128.6 153 47.1
Zm00001eb014810 Zea mays HOM05D006900 ORTHO05D008651 4.3e-27 127.5 110 55.5
Aqoxy5G02843 Aquilegia oxysepala HOM05D006900 ORTHO05D008651 5.6e-27 127.1 110 54.5
Hund03124 Selenicereus undatus HOM05D006900 ORTHO05D008651 7.3e-27 126.7 139 48.2
COL.COLO4_34620 Corchorus olitorius HOM05D006900 ORTHO05D008651 1.3e-26 125.9 249 35.7
CiPaw.02G075100 Carya illinoinensis HOM05D006900 ORTHO05D008651 1.6e-26 125.6 198 38.9
vmacro15184 Vaccinium macrocarpon HOM05D006900 ORTHO05D008651 4.0e-25 120.9 216 36.6
CANSAT78G0722 Cannabis sativa HOM05D006900 ORTHO05D008651 4.6e-21 107.5 102 51.0
CSS0028196 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 1.9e-19 102.1 80 60.0
CSS0035140 Camellia sinensis var. sinensis HOM05D006900 ORTHO05D008651 2.1e-18 98.6 80 57.5
MCO01G208 Micromonas commoda HOM05D006900 ORTHO05D008651 6.2e-18 97.1 144 36.8
Cre09.g416200 Chlamydomonas reinhardtii HOM05D006900 ORTHO05D008651 1.4e-14 85.9 154 35.7
PRCOL_00006040 Prasinoderma coloniale HOM05D001216 ORTHO05D005688 6.0e-13 80.5 110 40.0
Cpa.g.sc9.62 Carica papaya HOM05D006900 ORTHO05D008651 3.0e-12 78.2 113 40.7
Gohir.A10G171900 Gossypium hirsutum HOM05D006900 ORTHO05D008651 7.6e-08 63.5 150 32.0


User provided reference genes

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