Gene: Pp3c14_4340

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c14_4340
  • Transcript Identifier Pp3c14_4340V3.3
  • Gene Type Coding gene
  • Location Chr14 : 2837262-2840758 : negative

Gene Family Information

  • ID HOM05D000428
  • #Genes/#Species 1201/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c14_4340V3.3
  • pacid 32962350
  • alias Phypa_216291
  • alias Pp1s126_131V6
  • alias Phpat.014G013500
  • uniprot A9SVZ7

Descriptions

  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000289
ISO
PLAZA Integrative Orthologynuclear-transcribed mRNA poly(A) tail shortening AT1G71770
GO:0006446
ISO
PLAZA Integrative Orthologyregulation of translational initiation AT4G34110
GO:0006413
ISO
PLAZA Integrative Orthologytranslational initiation AT1G71770
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT1G22760
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT1G49760
GO:0016071
ISO
PLAZA Integrative OrthologymRNA metabolic process AT3G16380
GO:1900151
ISO
PLAZA Integrative Orthologyregulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay AT4G34110
GO:0060211
ISO
PLAZA Integrative Orthologyregulation of nuclear-transcribed mRNA poly(A) tail shortening AT1G22760

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0008143
IBA
GOA Databasepoly(A) binding
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G49760
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G49760
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008266
IBA
GOA Databasepoly(U) RNA binding
GO:0003723
IBA
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003730
IBA
GOA DatabasemRNA 3'-UTR binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:1990904
IBA
GOA Databaseribonucleoprotein complex
GO:0005634
IBA
GOA Databasenucleus
GO:0005829
IBA
GOA Databasecytosol
GO:0005737
IEA
GOA Databasecytoplasm

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR000504 RNA recognition motif domain
IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4
IPR035979 RNA-binding domain superfamily
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR002004 Polyadenylate-binding protein/Hyperplastic disc protein
IPR003954 RNA recognition motif domain, eukaryote
IPR036053 PABC (PABP) domain
Mapman id Description
17.4.2.5 Protein biosynthesis.translation initiation.mRNA loading.mRNA poly-A-tail binding factor (PABP)