Gene: AT1G49760

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT1G49760
  • Transcript Identifier AT1G49760.1
  • Gene Type Coding gene
  • Location Chr1 : 18416740-18419753 : positive

Gene Family Information

  • ID HOM05D000428
  • #Genes/#Species 1201/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT1G49760.1
  • symbol PAB8
  • Alias PABP8,POLY(A) BINDING PROTEIN 8
  • uniprot Q9FXA2

Descriptions

  • Description poly(A) binding protein 8
  • Computational description poly(A) binding protein 8 (PAB8); FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: response to cadmium ion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Polyadenylate-binding protein/Hyperplastic disc protein (InterPro:IPR002004), RNA recognition motif, RNP-1 (InterPro:IPR000504), Polyadenylate binding protein, human types 1, 2, 3, 4 (InterPro:IPR006515), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: poly(A) binding protein 2 (TAIR:AT4G34110.1); Has 986469 Blast hits to 485112 proteins in 21501 species: Archae - 20784; Bacteria - 581960; Metazoa - 196391; Fungi - 29721; Plants - 62748; Viruses - 68352; Other Eukaryotes - 26513 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006417
IEA
GOA Databaseregulation of translation
GO:0046686
IEP
GOA Databaseresponse to cadmium ion

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IBA
Gene OntologyRNA binding1
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0003730
IBA
Gene OntologymRNA 3'-UTR binding1
GO:0008266
IBA
Gene Ontologypoly(U) RNA binding1
GO:0003743
ISS
Gene Ontologytranslation initiation factor activity
GO:0008143
IBA
Gene Ontologypoly(A) binding1
GO:0003729
IDA, HDA
Gene OntologymRNA binding2 3
GO:0005515
IPI
Gene Ontologyprotein binding4

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005829
IDA
GOA Databasecytosol
GO:0005829
HDA
IBA
Gene Ontologycytosol1 5
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
HDA
IBA
Gene Ontologynucleus1 6
GO:0005737
IEA
GOA Databasecytoplasm
GO:0005737
ISM
Gene Ontologycytoplasm
GO:1990904
IBA
Gene Ontologyribonucleoprotein complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR035979 RNA-binding domain superfamily
IPR003954 RNA recognition motif domain, eukaryote
IPR002004 Polyadenylate-binding protein/Hyperplastic disc protein
IPR000504 RNA recognition motif domain
IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
IPR006515 Polyadenylate binding protein, human types 1, 2, 3, 4
IPR036053 PABC (PABP) domain
Mapman id Description
17.4.2.5 Protein biosynthesis.translation initiation.mRNA loading.mRNA poly-A-tail binding factor (PABP)