Gene: Potri.012G034300
General Information
Structural Information
- Species Populus trichocarpa
- Gene Identifier Potri.012G034300
- Transcript Identifier Potri.012G034300.2
- Gene Type Coding gene
- Location Chr12 : 3088073-3093080 : negative
Gene Family Information
- ID HOM05D001377
- #Genes/#Species 454/96
- Phylogenetic origin
- ID ORTHO05D001221
- #Genes/#Species 453/96
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- id Potri.012G034300.v4.1
- pacid 42784152
- synonym POPTR_0012s01110
Descriptions
- Description PTHR31908//PTHR31908:SF2 - FAMILY NOT NAMED // NUCLEAR MATRIX CONSTITUENT PROTEIN 1-LIKE PROTEIN-RELATED
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006997 | IEA | InterPro | nucleus organization | |
| GO:2000280 | ISO | PLAZA Integrative Orthology | regulation of root development | Os01g0767000 |
| GO:1902584 | ISO | PLAZA Integrative Orthology | positive regulation of response to water deprivation | Os01g0767000 |
| GO:0006974 | ISO | PLAZA Integrative Orthology | cellular response to DNA damage stimulus | AT5G65770 |
| GO:0097298 | ISO | PLAZA Integrative Orthology | regulation of nucleus size | AT5G65770 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004084 | ISO | PLAZA Integrative Orthology | branched-chain-amino-acid transaminase activity | AT5G65780 |
| GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT5G65770 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0005652 | ISO | PLAZA Integrative Orthology | nuclear lamina | AT5G65770 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G65780 |
| GO:0005737 | ISO | PLAZA Integrative Orthology | cytoplasm | AT5G65770 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT5G65780 |
| GO:0010369 | ISO | PLAZA Integrative Orthology | chromocenter | AT5G65770 |
| GO:0016363 | ISO | PLAZA Integrative Orthology | nuclear matrix | Os01g0767000 |
| GO:0034399 | ISO | PLAZA Integrative Orthology | nuclear periphery | AT5G65770 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR040418 | Protein crowded nuclei |
| Mapman id | Description |
|---|---|
| 20.4.3.1 | Cytoskeleton organisation.nuclear dynamics.nuclear shape determination.lamin-like protein (CRWN) |