Gene: AT5G65770
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G65770
- Transcript Identifier AT5G65770.3
- Gene Type Coding gene
- Location Chr5 : 26311587-26315610 : positive
Gene Family Information
- ID HOM05D001377
- #Genes/#Species 454/96
- Phylogenetic origin
- ID ORTHO05D001221
- #Genes/#Species 453/96
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT5G65770.3
- symbol LINC4
- Alias CRWN4,CROWDED NUCLEI 4
- full_name LITTLE NUCLEI4
- uniprot Q9FLH0
Descriptions
- Description little nuclei4
- Computational description LITTLE NUCLEI4 (LINC4); LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.2); Has 212892 Blast hits to 104310 proteins in 3685 species: Archae - 2813; Bacteria - 44601; Metazoa - 88597; Fungi - 16519; Plants - 11430; Viruses - 898; Other Eukaryotes - 48034 (source: NCBI BLink).
- Computational description LITTLE NUCLEI4 (LINC4); EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (TAIR:AT5G65780.2).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:1902584 | ISO | PLAZA Integrative Orthology | positive regulation of response to water deprivation | Os01g0767000 |
| GO:2000280 | ISO | PLAZA Integrative Orthology | regulation of root development | Os01g0767000 |
| GO:0006997 | IEA | GOA Database | nucleus organization | |
| GO:0006997 | IMP | Gene Ontology | nucleus organization | 1 |
| GO:0006997 | IEA | InterPro | nucleus organization | |
| GO:0006974 | IGI | Gene Ontology | cellular response to DNA damage stimulus | 2 |
| GO:0097298 | IMP | Gene Ontology | regulation of nucleus size | 3 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004084 | ISO | PLAZA Integrative Orthology | branched-chain-amino-acid transaminase activity | AT5G65780 |
| GO:0005515 | IPI | Gene Ontology | protein binding | 4 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0031965 | IEA | GOA Database | nuclear membrane | |
| GO:0016363 | ISO | PLAZA Integrative Orthology | nuclear matrix | Os01g0767000 |
| GO:0005739 | ISO | PLAZA Integrative Orthology | mitochondrion | AT5G65780 |
| GO:0009507 | ISO | PLAZA Integrative Orthology | chloroplast | AT5G65780 |
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005634 | IEA | InterPro | nucleus | |
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0005652 | IEA | GOA Database | nuclear lamina | |
| GO:0005652 | IDA | Gene Ontology | nuclear lamina | 1 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 1 |
| GO:0005654 | IEA | GOA Database | nucleoplasm | |
| GO:0010369 | IMP | Gene Ontology | chromocenter | 3 |
| GO:0034399 | IDA | Gene Ontology | nuclear periphery | 1 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR040418 | Protein crowded nuclei |
| Mapman id | Description |
|---|---|
| 20.4.3.1 | Cytoskeleton organisation.nuclear dynamics.nuclear shape determination.lamin-like protein (CRWN) |