Gene: PGSC0003DMG400009172

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400009172
  • Transcript Identifier PGSC0003DMT400023712
  • Gene Type Coding gene
  • Location ST4.03ch03 : 61630061-61638332 : negative

Gene Family Information

  • ID HOM05D001201
  • #Genes/#Species 520/96
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37460908
  • id PGSC0003DMG400009172.v4.03
  • uniprot M1AIV2

Descriptions

  • Description Transcriptional activator DEMETER
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0010216
ISO
PLAZA Integrative Orthologymaintenance of DNA methylation AT4G34060
GO:0080111
ISO
PLAZA Homology (enrichment)DNA demethylation HOM05D001201
GO:0010150
ISO
PLAZA Integrative Orthologyleaf senescence AT4G34060
GO:0006284
IEA
GOA Databasebase-excision repair
GO:0006284
IEA
InterProbase-excision repair
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IEA
InterProDNA repair

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0051747
ISO
PLAZA Integrative Orthologycytosine C-5 DNA demethylase activity AT4G34060
GO:0019104
ISO
PLAZA Integrative OrthologyDNA N-glycosylase activity AT4G34060
GO:0035514
ISO
PLAZA Homology (enrichment)DNA demethylase activity HOM05D001201
GO:0051539
IEA
GOA Database4 iron, 4 sulfur cluster binding
GO:0051539
IEA
InterPro4 iron, 4 sulfur cluster binding
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0051536
IEA
GOA Databaseiron-sulfur cluster binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif
IPR023170 Helix-hairpin-helix, base-excision DNA repair, C-terminal
IPR015333 Pollen allergen ole e 6
IPR011257 DNA glycosylase
IPR028925 Demeter, RRM-fold domain
IPR003265 HhH-GPD domain
Mapman id Description
12.5.3.1 Chromatin organisation.DNA methylation.ROS1-mediated DNA demethylation.methylcytosine-specific DNA glycosylase (ROS1)