Gene: PGR119G1579

General Information

Structural Information

  • Species Punica granatum
  • Gene Identifier PGR119G1579
  • Transcript Identifier PGR119G1579.02
  • Gene Type Coding gene
  • Location NC_045132.1 : 27274249-27278394 : positive

Gene Family Information

  • ID HOM05D002621
  • #Genes/#Species 261/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pid XP_031402286.1
  • name LOC116211889
  • name XM_031546426.1
  • id gene-LOC116211889
  • uniprot A0A2I0HHT1

Descriptions

  • product probable NOT transcription complex subunit VIP2, transcript variant X2
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IEA
GOA Databaseregulation of transcription, DNA-templated
GO:0006355
IEA
InterProregulation of transcription, DNA-templated
GO:0015074
ISO
PLAZA Integrative OrthologyDNA integration AT5G59710

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G07705
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G59710

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0030015
IEA
GOA DatabaseCCR4-NOT core complex
GO:0030015
IEA
InterProCCR4-NOT core complex
GO:0005634
ISO
PLAZA Integrative Orthologynucleus AT5G59710

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR007282 NOT2/NOT3/NOT5, C-terminal
IPR038635 CCR4-NOT complex subunit 2/3/5, N-terminal domain superfamily
IPR040168 Not2/Not3/Not5
Mapman id Description
16.4.2.1.2.4 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.component NOT2