Gene: Os10g0412100

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os10g0412100
  • Transcript Identifier Os10t0412100-01
  • Gene Type Coding gene
  • Location chr10 : 14357737-14361956 : negative

Gene Family Information

  • ID HOM05D000762
  • #Genes/#Species 768/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os10t0412100-01
  • MSU-ID LOC_Os10g27230.1
  • MSU-ID LOC_Os10g27230.2
  • MSU-ID LOC_Os10g27230.3
  • symbol OsCCR4a
  • name Carbon catabolite repressor 4a
  • uniprot Q338D5

Descriptions

  • Description Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed.
  • Description Carbon catabolite repressor 4, Exonuclease-endonuclease-phosphatase (EEP), mRNA deadenylation
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT3G58560
GO:0019252
ISO
PLAZA Integrative Orthologystarch biosynthetic process AT3G58560
GO:0005986
ISO
PLAZA Integrative Orthologysucrose biosynthetic process AT3G58560
GO:0000289
IBA
GOA Databasenuclear-transcribed mRNA poly(A) tail shortening
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis
GO:0090503
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, exonucleolytic

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003824
IEA
GOA Databasecatalytic activity
GO:0003824
IEA
InterProcatalytic activity
GO:0004535
IBA
GOA Databasepoly(A)-specific ribonuclease activity
GO:0000175
IBA
GOA Database3'-5'-exoribonuclease activity
GO:0004519
IEA
GOA Databaseendonuclease activity
GO:0004527
IEA
GOA Databaseexonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
IBA
GOA Databasecytoplasm
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT3G58560
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT3G58560
GO:0005634
IBA
GOA Databasenucleus
GO:0030014
IBA
GOA DatabaseCCR4-NOT complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005135 Endonuclease/exonuclease/phosphatase
IPR036691 Endonuclease/exonuclease/phosphatase superfamily
Mapman id Description
16.4.2.1.2.1 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CCR4