Gene: Os09g0534800

General Information

Structural Information

  • Species Oryza sativa ssp. japonica
  • Gene Identifier Os09g0534800
  • Transcript Identifier Os09t0534800-01
  • Gene Type Coding gene
  • Location chr09 : 21029077-21031805 : positive

Gene Family Information

  • ID HOM05D001573
  • #Genes/#Species 406/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Os09t0534800-01
  • MSU-ID LOC_Os09g36440.1
  • uniprot Q8W0W3

Descriptions

  • Description Transcription initiation factor IIB (General transcription factor TFIIB).
  • Description Similar to Transcription initiation factor IIB.
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006352
IBA
IEA
GOA DatabaseDNA-templated transcription, initiation
GO:0006352
IEA
InterProDNA-templated transcription, initiation
GO:0080092
ISO
PLAZA Integrative Orthologyregulation of pollen tube growth AT2G41630
GO:0009960
ISO
PLAZA Integrative Orthologyendosperm development AT3G29380
GO:0046686
ISO
PLAZA Integrative Orthologyresponse to cadmium ion AT3G29380
GO:0009555
ISO
PLAZA Integrative Orthologypollen development AT3G57370
GO:0055046
ISO
PLAZA Integrative Orthologymicrogametogenesis AT3G57370
GO:0000769
ISO
PLAZA Integrative Orthologysyncytium formation by mitosis without cytokinesis AT3G29380
GO:0010183
ISO
PLAZA Integrative Orthologypollen tube guidance AT2G41630
GO:0070897
IEA
GOA Databasetranscription preinitiation complex assembly
GO:0070897
IEA
InterProtranscription preinitiation complex assembly

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT2G41630
GO:0017025
IBA
IEA
GOA DatabaseTBP-class protein binding
GO:0017025
IEA
InterProTBP-class protein binding
GO:0046872
IEA
GOA Databasemetal ion binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISO
PLAZA Integrative Orthologycytoplasm AT3G10330
GO:0005634
IBA
IEA
GOA Databasenucleus
GO:0097550
IBA
GOA Databasetranscription preinitiation complex

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036915 Cyclin-like superfamily
IPR013150 Transcription factor TFIIB, cyclin-like domain
IPR013763 Cyclin-like
IPR000812 Transcription factor TFIIB
IPR013137 Zinc finger, TFIIB-type
Mapman id Description
15.3.3.2 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.basal transcription factor (TFIIb)