Gene: Os03g0166800
General Information
Structural Information
- Species Oryza sativa ssp. japonica
- Gene Identifier Os03g0166800
- Transcript Identifier Os03t0166800-01
- Gene Type Coding gene
- Location chr03 : 3617028-3621368 : positive
Gene Family Information
- ID HOM05D000762
- #Genes/#Species 768/100
- Phylogenetic origin
- ID ORTHO05D002448
- #Genes/#Species 287/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Os03t0166800-01
- MSU-ID LOC_Os03g07080.1
- MSU-ID LOC_Os03g07080.3
- MSU-ID LOC_Os03g07080.2
- symbol OsCCR4b
- name Carbon catabolite repressor 4b
- uniprot Q10R99
Descriptions
- Description Similar to Endonuclease/Exonuclease/phosphatase family protein, expressed.
- Description Carbon catabolite repressor 4, Exonuclease-endonuclease-phosphatase (EEP), mRNA deadenylation
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006397 | ISO | PLAZA Integrative Orthology | mRNA processing | AT3G58560 |
| GO:0019252 | ISO | PLAZA Integrative Orthology | starch biosynthetic process | AT3G58560 |
| GO:0005986 | ISO | PLAZA Integrative Orthology | sucrose biosynthetic process | AT3G58560 |
| GO:0090305 | IEA | GOA Database | nucleic acid phosphodiester bond hydrolysis | |
| GO:0000289 | IBA | GOA Database | nuclear-transcribed mRNA poly(A) tail shortening | |
| GO:0090503 | IEA | GOA Database | RNA phosphodiester bond hydrolysis, exonucleolytic |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0004535 | IBA | GOA Database | poly(A)-specific ribonuclease activity | |
| GO:0003824 | IEA | GOA Database | catalytic activity | |
| GO:0003824 | IEA | InterPro | catalytic activity | |
| GO:0000175 | IBA | GOA Database | 3'-5'-exoribonuclease activity | |
| GO:0004519 | IEA | GOA Database | endonuclease activity | |
| GO:0004527 | IEA | GOA Database | exonuclease activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005829 | ISO | PLAZA Integrative Orthology | cytosol | AT3G58560 |
| GO:0000932 | ISO | PLAZA Integrative Orthology | P-body | AT3G58560 |
| GO:0030014 | IBA | GOA Database | CCR4-NOT complex | |
| GO:0005737 | IBA | GOA Database | cytoplasm | |
| GO:0005634 | IBA | GOA Database | nucleus |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 16.4.2.1.2.1 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CCR4 |