Gene: Nitab4.5_0009780g0010

General Information

Structural Information

  • Species Nicotiana tabacum
  • Gene Identifier Nitab4.5_0009780g0010
  • Transcript Identifier Nitab4.5_0009780g0010.1
  • Gene Type Coding gene
  • Location Nitab4.5_0009780 : 34103-40548 : positive

Gene Family Information

  • ID HOM05D001835
  • #Genes/#Species 357/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Nitab4.5_0009780g0010.1
  • SR1-identifier Nta19g22400.1

Descriptions

  • Description FFD box, Like-Sm (LSM) domain, Lsm14 N-terminal, FDF domain, DFDF domain, TFG box
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0031087
ISO
PLAZA Integrative Orthologydeadenylation-independent decapping of nuclear-transcribed mRNA AT1G26110
GO:0010606
ISO
PLAZA Integrative Orthologypositive regulation of cytoplasmic mRNA processing body assembly AT1G26110
GO:0033962
ISO
PLAZA Integrative OrthologyP-body assembly AT1G26110
GO:0017148
ISO
PLAZA Integrative Orthologynegative regulation of translation AT1G26110

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0042803
ISO
PLAZA Integrative Orthologyprotein homodimerization activity AT1G26110
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G26110
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT1G26110

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000932
ISO
PLAZA Integrative OrthologyP-body AT1G26110
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G26110

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR025609 Lsm14-like, N-terminal
IPR019050 FDF domain
IPR010920 LSM domain superfamily
Mapman id Description
16.4.2.2.3 RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA decapping complex.regulatory component DCP5