Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Carub.0005s1148 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) scaffold_5 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG4G14820 LG-4 - View
Aethionema arabicum Aa31LG1G12340 LG-1 + View
Acer truncatum Atru.chr3.3737 chr3 + View
Actinidia chinensis Actinidia03757 Lachesis_group9 - View
Actinidia chinensis Actinidia37283 Lachesis_group24 - View
Actinidia chinensis Actinidia07100 Lachesis_group13 - View
Arabidopsis lyrata AL5G24250 scaffold_5 - View
Arabidopsis lyrata AL8G36780 scaffold_8 + View
Aquilegia oxysepala Aqoxy4G03171 CHR04 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.L7TZBM K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) arahy.Tifrunner.gnm1.Arahy.13 + View
Arabidopsis thaliana AT5G60170 RNA binding (RRM/RBD/RNP motifs) family protein RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1)%3B Has 1342 Blast hits to 828 proteins in 247 species: Archae - 0%3B Bacteria - 318%3B Metazoa - 242%3B Fungi - 228%3B Plants - 152%3B Viruses - 0%3B Other Eukaryotes - 402 (source: NCBI BLink). RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B INVOLVED IN: biological_process unknown%3B LOCATED IN: cellular_component unknown%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: Zinc finger%2C RING-type (InterPro:IPR001841)%2C RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1). Chr5 + View
Arabidopsis thaliana AT2G28540 RNA binding (RRM/RBD/RNP motifs) family protein RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%2C RNA recognition%2C domain 1 (InterPro:IPR003954)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1)%3B Has 925 Blast hits to 706 proteins in 218 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 245%3B Fungi - 180%3B Plants - 141%3B Viruses - 0%3B Other Eukaryotes - 333 (source: NCBI BLink). RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: nucleotide binding%2C zinc ion binding%2C nucleic acid binding%3B EXPRESSED IN: 24 plant structures%3B EXPRESSED DURING: 15 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT3G45630.1)%3B Has 940 Blast hits to 717 proteins in 219 species: Archae - 0%3B Bacteria - 26%3B Metazoa - 247%3B Fungi - 180%3B Plants - 143%3B Viruses - 0%3B Other Eukaryotes - 344 (source: NCBI BLink). Chr2 + View
Arabidopsis thaliana AT3G45630 RNA binding (RRM/RBD/RNP motifs) family protein RNA binding (RRM/RBD/RNP motifs) family protein%3B FUNCTIONS IN: RNA binding%2C zinc ion binding%2C nucleotide binding%2C nucleic acid binding%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: RNA recognition motif%2C RNP-1 (InterPro:IPR000504)%2C Zinc finger%2C RING-type (InterPro:IPR001841)%2C Nucleotide-binding%2C alpha-beta plait (InterPro:IPR012677)%3B BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein (TAIR:AT5G60170.1)%3B Has 2241 Blast hits to 1174 proteins in 287 species: Archae - 0%3B Bacteria - 612%3B Metazoa - 421%3B Fungi - 369%3B Plants - 161%3B Viruses - 3%3B Other Eukaryotes - 675 (source: NCBI BLink). Chr3 - View
Brassica carinata BcaC01g01962 ChrC01 + View
Brassica carinata BcaB05g22626 ChrB05 + View
Brassica carinata BcaB01g01080 ChrB01 + View
Brassica napus C09p52650 C09 + View
Brassica napus C03p13060 C03 - View
Brassica napus A03p11330 A03 - View
Brassica napus A06p21320 A06 + View
Brassica napus C03p70080 C03 - View
Brassica oleracea BolC9t58132H C9 + View
Brassica oleracea BolC3t13769H C3 - View
Brassica rapa BraA06t25220Z A06 + View
Brassica rapa BraA03t10447Z A03 - View
Camellia sinensis var. sinensis CSS0003168 unnamed protein product [Coffea canephora] Chr1 + View
Camellia sinensis var. sinensis CSS0023988 PREDICTED: uncharacterized protein LOC100267264 isoform X1 [Vitis vinifera] Chr11 + View
Cannabis sativa CANSAT54G1232 NC_044375.1 - View
Cicer arietinum L. Ca_11444_v3 Ca_LG4_v3 - View
Cicer arietinum L. Ca_19232_v3 Ca_LG6_v3 - View
Coffea canephora Cc01_g11820 Putative RNA binding (RRM/RBD/RNP motifs) family protein chr1 + View
Citrus clementina Ciclev10027731m.g scaffold_8 + View
Ceratophyllum demersum CDE07G0589 5 + View
Ceratophyllum demersum CDE09G0797 7 + View
Carpinus fangiana Cfa017499 Cfa07 - View
Cardamine hirsuta CARHR121550 RNA binding (RRM/RBD/RNP motifs) family protein Chr4 + View
Cardamine hirsuta CARHR273820 CCR4-NOT transcription complex subunit 4 Chr8 + View
Carya illinoinensis CiPaw.13G104800 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Chr13 - View
Citrullus lanatus ClCG02G020770 CCR4-NOT transcription complex subunit CG_Chr02 + View
Cucumis sativus L. CsaV3_6G021850 RNA binding (RRM/RBD/RNP motifs) family protein chr6 - View
Daucus carota DCAR_015568 hypothetical protein DCARv2_Chr4 - View
Daucus carota DCAR_018847 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv35704 GWHABJS00000015 - View
Davidia involucrata Dinv32813 GWHABJS00000010 + View
Davidia involucrata Dinv37245 GWHABJS00000021 + View
Durio zibethinus Duzib150G1164 NW_019167882.1 + View
Eucalyptus grandis Eucgr.B02454 Chr02 - View
Eucalyptus grandis Eucgr.J02120 Chr10 - View
Eutrema salsugineum Thhalv10016186m.g K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) scaffold_10 + View
Eutrema salsugineum Thhalv10012563m.g K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) scaffold_2 - View
Fragaria x ananassa FAN16G2581 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Fvb3-3 - View
Fragaria x ananassa FAN25G2198 PF13893//PF14570 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_5) // RING/Ubox like zinc-binding domain (zf-RING_4) Fvb3-1 + View
Gossypium hirsutum Gohir.D07G097900 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) D07 + View
Gossypium hirsutum Gohir.A08G000088 PTHR12603:SF3 - RNA BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN A08 + View
Gossypium hirsutum Gohir.D08G008800 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) D08 + View
Glycine max Glyma.10G048700 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Gm10 - View
Glycine max Glyma.13G136500 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Gm13 - View
Glycine max Glyma.15G044500 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Gm15 - View
Glycine max Glyma.12G073200 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Gm12 + View
Glycine max Glyma.13G329600 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Gm13 + View
Gossypium raimondii Gorai.001G105300 Chr01 + View
Gossypium raimondii Gorai.004G002000 Chr04 + View
Lupinus albus Lalb_Chr03g0027031 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Lalb_Chr03 - View
Lupinus albus Lalb_Chr14g0374841 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Lalb_Chr14 + View
Lupinus albus Lalb_Chr01g0004061 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Lalb_Chr01 - View
Lupinus albus Lalb_Chr19g0137531 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Lalb_Chr19 + View
Lotus japonicus Lj3g0016662 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) chr3 - View
Lonicera japonica Lj2C1042G4 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_5_164641 Lsat_1_v8_lg_5 + View
Manihot esculenta Manes.09G080400 Chromosome09 + View
Manihot esculenta Manes.04G026900 Chromosome04 + View
Punica granatum PGR102G3367 NC_045129.1 - View
Prunus persica Prupe.6G242300 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Pp06 + View
Pisum sativum Psat7g221920 RING/Ubox like zinc-binding domain chr7LG7 + View
Pisum sativum Psat5g276760 RNA recognition motif. (a.k.a. RRM + RBD + or RNP domain) chr5LG3 - View
Populus trichocarpa Potri.006G132300 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) Chr06 + View
Rhododendron simsii Rhsim13G0090500 chr13 - View
Striga asiatica SGA_v2.0_scaffold61G21188 scaffold61 + View
Salix brachista Sabra16G0091500 GWHAAZH00000016 - View
Sechium edule Sed0023055 LG05 - View
Solanum lycopersicum Solyc11g072590.3 RNA binding (RRM/RBD/RNP motifs) family protein (AHRD V3.3 *** Q9M1E4_ARATH) SL4.0ch11 + View
Schrenkiella parvula Sp4g11360 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) ch4-6 + View
Schrenkiella parvula Sp5g15830 K10643 - CCR4-NOT transcription complex subunit 4 (CNOT4, NOT4, MOT2) ch5-1 + View
Solanum pennellii Sopen11g030240 RNA binding (RRM/RBD/RNP motifs) family protein | FUNCTIONS IN: RNA binding, zinc ion binding, nucleotide binding, nucleic acid binding | EXPRESSED IN: 23 plant structures | EXPRESSED DURING: 13 growth stages | CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 , Zinc finger, RING-type , Nucleotide-binding, alpha-beta plait | BEST Arabidopsis thaliana protein match is: RNA binding (RRM/RBD/RNP motifs) family protein Spenn-ch11 + View
Trochodendron aralioides TAR369G0440 group18 - View
Theobroma cacao Thecc.09G336200 RNA binding family protein Chromosome_9 - View
Tarenaya hassleriana THA.LOC104810834 uncharacterized protein LOC104810834 isoform X1 NW_010965304.1 + View
Tarenaya hassleriana THA.LOC104799481 uncharacterized protein LOC104799481 isoform X1 NW_010968505.1 + View
Trifolium pratense TPR.G2975 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI79G1131 NC_052238.1 - View
Tripterygium wilfordii TWI75G0843 NC_052253.1 - View
Utricularia gibba unitig_747.g22011 unitig_747 + View
Vaccinium macrocarpon vmacro03146 Similar to CNOT4: CCR4-NOT transcription complex subunit 4 (Homo sapiens OX%3D9606) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1080G1499 CM024079.1 - View
Vitis vinifera GSVIVG01025102001 chr6 + View