Gene: Ah.11g047880

General Information

Structural Information

  • Species Amaranthus hybridus
  • Gene Identifier Ah.11g047880
  • Transcript Identifier Ah.11g047880-v1.1.a1
  • Gene Type Coding gene
  • Location AmaHy_arrow1_Scaffold_11 : 17786855-17817534 : positive

Gene Family Information

  • ID HOM05D000924
  • #Genes/#Species 651/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Ah.11g047880-v1.1.a1

Descriptions

  • Description DExH-box ATP-dependent RNA helicase DExH14 (EC 3.6.4.13) (BRR2 homolog C) (AtBRR2C) (Pre-mRNA-splicing helicase BRR2C)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051026
ISO
PLAZA Integrative Orthologychiasma assembly AT3G27730
GO:0007131
ISO
PLAZA Integrative Orthologyreciprocal meiotic recombination AT3G27730
GO:0010228
ISO
PLAZA Integrative Orthologyvegetative to reproductive phase transition of meristem AT1G20960
GO:0006397
ISO
PLAZA Integrative OrthologymRNA processing AT1G20960

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
InterPronucleic acid binding
GO:0005524
IEA
InterProATP binding
GO:0005515
ISO
PLAZA Integrative Orthologyprotein binding AT1G20960
GO:0003729
ISO
PLAZA Integrative OrthologymRNA binding AT5G61140

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISO
PLAZA Integrative Orthologynucleus Os02g0617500
GO:0009506
ISO
PLAZA Integrative Orthologyplasmodesma AT2G42270
GO:0005829
ISO
PLAZA Integrative Orthologycytosol AT1G20960
GO:0005694
ISO
PLAZA Integrative Orthologychromosome Os02g0617500
GO:0005730
ISO
PLAZA Integrative Orthologynucleolus AT1G20960

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR011545 DEAD/DEAH box helicase domain
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR004179 Sec63 domain
IPR001650 Helicase, C-terminal
IPR036390 Winged helix DNA-binding domain superfamily
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR035892 C2 domain superfamily
IPR014756 Immunoglobulin E-set
Mapman id Description
16.2.7.1.4 RNA processing.pre-mRNA splicing.spliceosome assembly and disassembly.RNA helicase activities.RNA helicase (Brr2)