Gene: AT3G27730

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G27730
  • Transcript Identifier AT3G27730.3
  • Gene Type Coding gene
  • Location Chr3 : 10273391-10280213 : negative

Gene Family Information

  • ID HOM05D000924
  • #Genes/#Species 651/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G27730.3
  • symbol RCK
  • Alias MER3
  • full_name ROCK-N-ROLLERS
  • uniprot Q5D892

Descriptions

  • Description DNA helicase ROCK-N-ROLLERS
  • Computational description ROCK-N-ROLLERS (RCK); CONTAINS InterPro DOMAIN/s: ATPase, AAA type, core (InterPro:IPR003593), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Sec63 domain (InterPro:IPR004179), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: U5 small nuclear ribonucleoprotein helicase (TAIR:AT5G61140.2); Has 10425 Blast hits to 9108 proteins in 1594 species: Archae - 861; Bacteria - 4193; Metazoa - 1363; Fungi - 1417; Plants - 555; Viruses - 24; Other Eukaryotes - 2012 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0051321
IEA
GOA Databasemeiotic cell cycle
GO:0032508
IEA
GOA DatabaseDNA duplex unwinding
GO:0000712
IBA
Gene Ontologyresolution of meiotic recombination intermediates1
GO:0051026
IMP
Gene Ontologychiasma assembly2
GO:0007131
IMP
Gene Ontologyreciprocal meiotic recombination2

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003678
IEA
GOA DatabaseDNA helicase activity
GO:0003678
ISS, IBA
Gene OntologyDNA helicase activity1 2
GO:0005524
IEA
GOA DatabaseATP binding
GO:0005524
IEA
InterProATP binding
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0019843
IEA
GOA DatabaserRNA binding
GO:0004386
IEA
GOA Databasehelicase activity
GO:0000166
IEA
GOA Databasenucleotide binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0003677
IEA
GOA DatabaseDNA binding
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003724
IEA
Gene OntologyRNA helicase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005694
ISO
PLAZA Integrative Orthologychromosome Os02g0617500
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM, IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036388 Winged helix-like DNA-binding domain superfamily
IPR004179 Sec63 domain
IPR001650 Helicase, C-terminal
IPR027417 P-loop containing nucleoside triphosphate hydrolase
IPR014001 Helicase superfamily 1/2, ATP-binding domain
IPR011545 DEAD/DEAH box helicase domain
Mapman id Description
13.3.5.5.1.1 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.DNA helicase (RCK/MER3)