Gene: AT5G52300
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G52300
- Transcript Identifier AT5G52300.1
- Gene Type Coding gene
- Location Chr5 : 21237205-21239404 : positive
Gene Family Information
- ID HOM05D004189
- #Genes/#Species 169/80
- Phylogenetic origin
- ID ORTHO05D004092
- #Genes/#Species 192/84
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G52300.1
- symbol LTI65
- Alias RD29B,RESPONSIVE TO DESSICATION 29B
- full_name LOW-TEMPERATURE-INDUCED 65
- uniprot Q04980
Descriptions
- Description CAP160 protein
- Computational description LOW-TEMPERATURE-INDUCED 65 (LTI65); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to water deprivation, response to salt stress, response to cold, abscisic acid mediated signaling pathway, response to abscisic acid stimulus; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf, seed; EXPRESSED DURING: dry seed stage, LP.04 four leaves visible; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT4G25580.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0009737 | IEP IEA | Gene Ontology | response to abscisic acid | 1 |
| GO:0009737 | IEA | InterPro | response to abscisic acid | |
| GO:0009738 | IEP | Gene Ontology | abscisic acid-activated signaling pathway | 2 |
| GO:0009414 | IEP | Gene Ontology | response to water deprivation | 1 |
| GO:0009651 | IEP | Gene Ontology | response to salt stress | 1 |
| GO:0010150 | IMP | Gene Ontology | leaf senescence | 3 |
| GO:0009409 | IEP | Gene Ontology | response to cold | 4 |
| GO:0006950 | IBA | Gene Ontology | response to stress | 5 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003674 | ND | Gene Ontology | molecular_function |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005737 | ISM | Gene Ontology | cytoplasm |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |