Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G52290 Arabidopsis thaliana HOM05D005579 ORTHO05D006775 0.0e+00 3068.9 1595 100.0
AL8G26680 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 0.0e+00 2754.2 1607 90.2
AL271U10020 Arabidopsis lyrata HOM05D005579 ORTHO05D006775 0.0e+00 2733.0 1653 87.7
Carub.0008s1239 Capsella rubella HOM05D005579 ORTHO05D006775 0.0e+00 2645.5 1607 86.1
CARHR265270 Cardamine hirsuta HOM05D005579 ORTHO05D006775 0.0e+00 2404.8 1624 79.5
Thhalv10015364m.g Eutrema salsugineum HOM05D005579 ORTHO05D006775 0.0e+00 2349.3 1626 77.1
Sp6g14550 Schrenkiella parvula HOM05D005579 ORTHO05D006775 0.0e+00 2333.1 1636 77.3
A03p15740 Brassica napus HOM05D005579 ORTHO05D006775 0.0e+00 2174.4 1628 73.7
BcaC01g06176 Brassica carinata HOM05D005579 ORTHO05D006775 0.0e+00 2172.1 1629 73.6
C03p18410 Brassica napus HOM05D005579 ORTHO05D006775 0.0e+00 2167.1 1628 73.6
BraA03t10864Z Brassica rapa HOM05D005579 ORTHO05D006775 0.0e+00 2144.8 1692 70.9
BolC3t14238H Brassica oleracea HOM05D005579 ORTHO05D006775 0.0e+00 2132.8 1698 70.6
BcaB01g04199 Brassica carinata HOM05D005579 ORTHO05D006775 0.0e+00 2125.9 1630 72.9
Aa31LG3G8710 Aethionema arabicum HOM05D005579 ORTHO05D006775 0.0e+00 2032.3 1626 69.5
THA.LOC104800252 Tarenaya hassleriana HOM05D005579 ORTHO05D006775 0.0e+00 1573.1 1653 56.6
Ciclev10006492m.g Citrus clementina HOM05D005579 ORTHO05D006775 7.0e-293 1011.5 1664 40.6
Cfa008319 Carpinus fangiana HOM05D005579 ORTHO05D006775 6.1e-289 998.4 1673 39.3
QL09p014220 Quercus lobata HOM05D005579 ORTHO05D006775 1.1e-272 944.5 1491 41.4
Cpa.g.sc107.52 Carica papaya HOM05D005579 ORTHO05D006775 5.2e-272 942.2 1676 39.0
CiPaw.04G071000 Carya illinoinensis HOM05D005579 ORTHO05D006775 2.3e-267 926.8 1669 38.6
Duzib068G1336 Durio zibethinus HOM05D005579 ORTHO05D006775 1.4e-264 917.5 1691 38.9
Gohir.D12G259200 Gossypium hirsutum HOM05D005579 ORTHO05D006775 1.9e-258 897.1 1776 37.2
Gorai.008G277600 Gossypium raimondii HOM05D005579 ORTHO05D006775 1.1e-253 881.3 1758 37.1
Gohir.A12G257850 Gossypium hirsutum HOM05D005579 ORTHO05D006775 3.1e-248 863.2 1737 37.1
Dinv28443 Davidia involucrata HOM05D005579 ORTHO05D006775 1.3e-246 857.8 1429 40.4
TAR367G0001 Trochodendron aralioides HOM05D005579 ORTHO05D006775 8.4e-246 855.1 1688 36.6
COL.COLO4_14309 Corchorus olitorius HOM05D005579 ORTHO05D006775 5.3e-240 835.9 1683 36.6
TWI23G0169 Tripterygium wilfordii HOM05D005579 ORTHO05D006775 3.9e-235 819.7 1653 35.9
GSVIVG01028977001 Vitis vinifera HOM05D005579 ORTHO05D006775 6.9e-232 808.9 1594 37.6
Thecc.03G176600 Theobroma cacao HOM05D005579 ORTHO05D006775 6.7e-227 792.3 1668 36.0
Glyma.09G139400 Glycine max HOM05D005579 ORTHO05D006775 3.7e-225 786.6 1652 36.0
VMungo0464G1636 Vigna mungo HOM05D005579 ORTHO05D006775 1.8e-224 784.3 1652 35.0
Lj2g0003134 Lotus japonicus HOM05D005579 ORTHO05D006775 1.1e-221 775.0 1682 35.3
Sed0022815 Sechium edule HOM05D005579 ORTHO05D006775 2.5e-221 773.9 1679 35.7
PGR142G3926 Punica granatum HOM05D005579 ORTHO05D006775 9.4e-221 771.9 1703 35.2
ClCG09G012930 Citrullus lanatus HOM05D005579 ORTHO05D006775 1.4e-219 768.1 1723 35.0
Phvul.004G117000 Phaseolus vulgaris HOM05D005579 ORTHO05D006775 5.7e-218 762.7 1649 35.6
Nn6g33500 Nelumbo nucifera HOM05D005579 ORTHO05D006775 2.2e-217 760.8 1701 34.9
CsaV3_3G049940 Cucumis sativus L. HOM05D005579 ORTHO05D006775 5.3e-216 756.1 1694 34.8
Peaxi162Scf00444g00841 Petunia axillaris HOM05D005579 ORTHO05D006775 6.7e-211 739.2 1690 33.8
Psat0s2227g0080 Pisum sativum HOM05D005579 ORTHO05D006775 2.0e-207 727.6 1734 33.2
Actinidia32860 Actinidia chinensis HOM05D005579 ORTHO05D006775 5.5e-205 719.5 1612 35.0
Sopen03g004630 Solanum pennellii HOM05D005579 ORTHO05D006775 3.7e-201 706.8 1675 33.3
Solyc03g025820.3 Solanum lycopersicum HOM05D005579 ORTHO05D006775 2.9e-198 697.2 1693 33.1
Cc02_g02990 Coffea canephora HOM05D005579 ORTHO05D006775 9.8e-194 682.2 1515 33.3
Nitab4.5_0000716g0010 Nicotiana tabacum HOM05D005579 ORTHO05D006775 1.7e-193 681.4 1660 33.0
TPR.G10740 Trifolium pratense HOM05D005579 ORTHO05D006775 2.8e-193 680.6 1770 32.5
Nitab4.5_0009681g0030 Nicotiana tabacum HOM05D005579 ORTHO05D006775 3.5e-191 673.7 1671 32.7
Potri.012G141100 Populus trichocarpa HOM05D005579 ORTHO05D006775 5.9e-191 672.9 1649 33.4
Sc13g0008650 Simmondsia chinensis HOM05D005579 ORTHO05D006775 5.5e-189 666.4 1509 34.4
MELO3C003322.2 Cucumis melo HOM05D005579 ORTHO05D006775 4.7e-188 663.3 1693 32.9
Sabra12G0106200 Salix brachista HOM05D005579 ORTHO05D006775 1.5e-186 658.3 1660 33.0
CSS0047196 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 2.0e-186 657.9 1184 39.9
CAN.G490.30 Capsicum annuum HOM05D005579 ORTHO05D006775 1.3e-185 655.2 1512 34.5
Medtr6g045357 Medicago truncatula HOM05D005579 ORTHO05D006775 1.3e-185 655.2 1630 33.5
CSS0017636 Camellia sinensis var. sinensis HOM05D005579 ORTHO05D006775 3.1e-184 650.6 1184 39.5
Prupe.2G294300 Prunus persica HOM05D005579 ORTHO05D006775 1.2e-183 648.7 1683 32.6
RcHm_v2.0_Chr1g0377251 Rosa chinensis HOM05D005579 ORTHO05D006775 2.3e-179 634.4 1652 33.1
FvH4_7g29470 Fragaria vesca HOM05D005579 ORTHO05D006775 4.4e-178 630.2 1681 32.7
FAN01G1040 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.4e-178 630.2 1668 32.9
FAN03G0333 Fragaria x ananassa HOM05D005579 ORTHO05D006775 4.4e-178 630.2 1676 32.4
Manes.06G147100 Manihot esculenta HOM05D005579 ORTHO05D006775 4.4e-178 630.2 1640 32.6
MD07G1268700 Malus domestica HOM05D005579 ORTHO05D006775 4.1e-176 623.6 1690 32.2
EL10Ac3g05643 Beta vulgaris HOM05D005579 ORTHO05D006775 1.0e-174 619.0 1754 31.2
DCAR_018198 Daucus carota HOM05D005579 ORTHO05D006775 6.6e-174 616.3 1719 31.9
FAN03G0790 Fragaria x ananassa HOM05D005579 ORTHO05D006775 7.3e-173 612.8 1688 32.0
Ah.07g207210 Amaranthus hybridus HOM05D005579 ORTHO05D006775 1.4e-171 608.6 1690 32.6
FAN06G0670 Fragaria x ananassa HOM05D005579 ORTHO05D006775 5.0e-166 590.1 1758 30.2
CANSAT21G2370 Cannabis sativa HOM05D005579 ORTHO05D006775 1.4e-163 582.0 1670 31.0
FAN06G0715 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.3e-161 575.5 1691 30.2
Atru.chr1.458 Acer truncatum HOM05D005579 ORTHO05D006775 2.6e-154 551.2 814 45.5
Rhsim03G0180800 Rhododendron simsii HOM05D005579 ORTHO05D006775 3.7e-153 547.4 1642 30.6
Haze_13712 Corylus avellana HOM05D005579 ORTHO05D006775 1.4e-136 492.3 758 43.5
FAN10G2011 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.4e-131 475.7 1243 33.0
Hma1.2p1_0270F.1_g108020 Hydrangea macrophylla HOM05D005579 ORTHO05D006775 9.0e-131 473.0 847 40.6
MBI17_g46332_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 3.4e-130 471.1 1095 32.4
ECA232G1470 Erigeron canadensis HOM05D005579 ORTHO05D006775 9.6e-125 453.0 1622 29.2
Migut.F00340 Erythranthe guttata HOM05D005579 ORTHO05D006775 6.2e-124 450.3 1654 28.4
Lalb_Chr19g0130861 Lupinus albus HOM05D005579 ORTHO05D006775 7.6e-122 443.4 1468 29.9
PSO063G6446 Papaver somniferum HOM05D005579 ORTHO05D006775 1.9e-120 438.7 1654 27.6
Oeu056255.1 Olea europaea HOM05D005579 ORTHO05D006775 7.9e-119 433.3 909 33.2
PSO782G1268 Papaver somniferum HOM05D005579 ORTHO05D006775 1.1e-117 429.5 1656 27.3
Os02g0642600 Oryza sativa ssp. japonica HOM05D005579 ORTHO05D006775 6.9e-115 420.2 1836 27.6
SGA_v2.0_scaffold60G21038 Striga asiatica HOM05D005579 ORTHO05D006775 5.0e-113 414.1 1651 27.9
SalBow4G1821 Salvia bowleyana HOM05D005579 ORTHO05D006775 8.5e-113 413.3 1693 27.6
SalBow4G2278 Salvia bowleyana HOM05D005579 ORTHO05D006775 8.5e-113 413.3 1697 27.7
Zm00001eb248620 Zea mays HOM05D005579 ORTHO05D006775 5.1e-110 404.1 1827 26.8
AUR62021193 Chenopodium quinoa HOM05D005579 ORTHO05D006775 1.4e-107 396.0 1547 27.6
MBI17_g39341_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 3.1e-107 394.8 1000 32.0
Haze_13711 Corylus avellana HOM05D005579 ORTHO05D006775 4.1e-107 394.4 663 35.7
AUR62015985 Chenopodium quinoa HOM05D005579 ORTHO05D006775 1.3e-105 389.4 1582 27.3
Eucgr.L01677 Eucalyptus grandis HOM05D005579 ORTHO05D006775 8.8e-102 376.7 681 40.1
arahy.Tifrunner.gnm1.ann1.TEHT7Q Arachis hypogaea HOM05D005579 ORTHO05D006775 1.7e-100 372.5 1397 27.9
HanXRQChr15g0495541 Helianthus annuus HOM05D005579 ORTHO05D006775 1.8e-99 369.0 1457 28.2
Lsat_1_v5_gn_9_55980 Lactuca sativa HOM05D005579 ORTHO05D006775 6.9e-99 367.1 1654 25.8
arahy.Tifrunner.gnm1.ann1.Q0IWYL Arachis hypogaea HOM05D005579 ORTHO05D006775 7.2e-96 357.1 1392 27.7
PGSC0003DMG400014341 Solanum tuberosum HOM05D005579 ORTHO05D006775 5.2e-94 350.9 689 37.7
MD01G1200800 Malus domestica HOM05D005579 ORTHO05D006775 6.1e-87 327.4 760 35.4
HPP92_008526 Vanilla planifolia HOM05D005579 ORTHO05D006775 2.8e-84 318.5 635 35.0
ATR0680G156 Amborella trichopoda HOM05D005579 ORTHO05D006775 1.5e-72 279.6 808 31.1
FAN10G0535 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.3e-70 272.3 533 37.9
SHI39775 Sapria himalayana HOM05D005579 ORTHO05D006775 5.2e-70 271.2 706 32.3
Ca_25744_v3 Cicer arietinum L. HOM05D005579 ORTHO05D006775 4.7e-47 194.9 454 31.7
Hund11748 Selenicereus undatus HOM05D005579 ORTHO05D006775 5.2e-46 191.4 515 32.2
unitig_37.g12526 Utricularia gibba HOM05D005579 ORTHO05D006775 4.9e-44 184.9 626 31.9
Mapoly0013s0198 Marchantia polymorpha HOM05D005579 ORTHO05D006775 1.9e-40 172.9 683 26.6
SMO364G0179 Selaginella moellendorffii HOM05D005579 ORTHO05D006775 8.1e-39 167.5 233 41.6
CDE08G0179 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.8e-38 166.4 609 29.9
Actinidia34112 Actinidia chinensis HOM05D005579 ORTHO05D006775 2.4e-35 156.0 154 55.8
Pp3c13_14750 Physcomitrium patens HOM05D005579 ORTHO05D006775 1.5e-29 136.7 225 36.9
Hund11747 Selenicereus undatus HOM05D005579 ORTHO05D006775 4.9e-28 131.7 214 36.0
Pp3c21_13440 Physcomitrium patens HOM05D005579 ORTHO05D006775 6.6e-25 121.3 225 33.8
MBI17_g46331_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D006775 3.3e-24 119.0 292 31.2
MD01G1200900 Malus domestica HOM05D005579 ORTHO05D006775 4.8e-23 115.2 307 31.3
SEGI_30883 Sequoiadendron giganteum HOM05D005579 ORTHO05D006775 1.1e-22 114.0 621 21.9
CDE08G1090 Ceratophyllum demersum HOM05D005579 ORTHO05D006775 1.2e-21 110.5 138 44.2
FvH4_7g29490 Fragaria vesca HOM05D005579 ORTHO05D006775 1.4e-11 77.0 84 51.2
FAN06G4680 Fragaria x ananassa HOM05D005579 ORTHO05D006775 1.4e-11 77.0 84 51.2
FAN10G3029 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.4e-11 76.3 84 51.2
Haze_13709 Corylus avellana HOM05D005579 ORTHO05D006775 3.2e-11 75.9 163 36.8
Dinv28442 Davidia involucrata HOM05D005579 ORTHO05D006775 3.2e-11 75.9 213 31.0
TAR375G0314 Trochodendron aralioides HOM05D005579 ORTHO05D006775 3.2e-11 75.9 212 28.3
FAN06G4979 Fragaria x ananassa HOM05D005579 ORTHO05D006775 2.1e-10 73.2 82 47.6
QL09p014214 Quercus lobata HOM05D005579 ORTHO05D006775 1.6e-07 63.5 92 42.4
Medtr6g045353 Medicago truncatula HOM05D005579 ORTHO05D006775 2.8e-07 62.8 107 41.1
Lalb_Chr19g0130841 Lupinus albus HOM05D005579 ORTHO05D006775 3.7e-07 62.4 83 44.6
MBI17_g46440_MAGBIO Magnolia biondii HOM05D005579 ORTHO05D048546 9.0e-06 57.8 133 32.3


User provided reference genes

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