Gene: AT5G48390

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G48390
  • Transcript Identifier AT5G48390.1
  • Gene Type Coding gene
  • Location Chr5 : 19612078-19615363 : positive

Gene Family Information

  • ID HOM05D004953
  • #Genes/#Species 150/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G48390.1
  • symbol AtSPO22
  • Alias ATZIP4
  • full_name A. thaliana homologue of yeast SPO22
  • uniprot B0M1H3

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description ATZIP4; FUNCTIONS IN: binding; INVOLVED IN: female meiosis, resolution of meiotic recombination intermediates, male meiosis; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Meiosis specific protein SPO22 (InterPro:IPR013940), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000712
IMP
Gene Ontologyresolution of meiotic recombination intermediates1
GO:0007140
IMP
Gene Ontologymale meiotic nuclear division1
GO:0007143
IMP
Gene Ontologyfemale meiotic nuclear division1
GO:0006310
IEA
GOA DatabaseDNA recombination
GO:0051321
IEA
GOA Databasemeiotic cell cycle
GO:0051321
IEA
InterPromeiotic cell cycle
GO:0007131
ISO
PLAZA Integrative Orthologyreciprocal meiotic recombination Os01g0890900
GO:0071139
ISO
PLAZA Integrative Orthologyresolution of recombination intermediates Os01g0890900
GO:0007129
ISO
PLAZA Integrative Orthologyhomologous chromosome pairing at meiosis Os01g0890900

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IDA
GOA Databasechloroplast
GO:0009507
HDA
Gene Ontologychloroplast2
GO:0005694
IEA
GOA Databasechromosome
GO:0005634
IEA
GOA Databasenucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR019734 Tetratricopeptide repeat
IPR013940 Meiosis specific protein Spo22/ZIP4/TEX11
Mapman id Description
13.3.5.5.1.5 Cell cycle organisation.mitosis and meiosis.meiotic recombination.meiotic crossover.class I interference-sensitive crossover pathway.accessory protein (SPO22/ZIP4)