Gene: AT5G48400
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT5G48400
- Transcript Identifier AT5G48400.2
- Gene Type Coding gene
- Location Chr5 : 19616244-19619246 : positive
Gene Family Information
- ID HOM05D000109
- #Genes/#Species 3058/96
- Phylogenetic origin
- ID ORTHO05D000210
- #Genes/#Species 1382/87
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT5G48400.2
- symbol ATGLR1.2
- uniprot Q9LV72
Descriptions
- Description Glutamate receptor family protein
- Computational description ATGLR1.2; FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 1.3 (TAIR:AT5G48410.1); Has 3010 Blast hits to 2965 proteins in 183 species: Archae - 3; Bacteria - 141; Metazoa - 2192; Fungi - 0; Plants - 596; Viruses - 0; Other Eukaryotes - 78 (source: NCBI BLink).
- Computational description ATGLR1.2; FUNCTIONS IN: protein binding, intracellular ligand-gated ion channel activity; INVOLVED IN: cellular calcium ion homeostasis, response to light stimulus; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Extracellular solute-binding protein, family 3 (InterPro:IPR001638), Ionotropic glutamate receptor (InterPro:IPR001320), Extracellular ligand-binding receptor (InterPro:IPR001828), Glutamate receptor-related (InterPro:IPR015683), Ionotropic glutamate-like receptor, plant (InterPro:IPR017103); BEST Arabidopsis thaliana protein match is: glutamate receptor 1.3 (TAIR:AT5G48410.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006811 | IEA | GOA Database | ion transport | |
| GO:0034220 | IEA | GOA Database | ion transmembrane transport | |
| GO:0070588 | IEA | GOA Database | calcium ion transmembrane transport | |
| GO:0009416 | NAS | Gene Ontology | response to light stimulus | 1 |
| GO:0006874 | NAS | Gene Ontology | cellular calcium ion homeostasis | 1 |
| GO:0071230 | ISS | Gene Ontology | cellular response to amino acid stimulus | |
| GO:0019722 | ISS | Gene Ontology | calcium-mediated signaling | |
| GO:0006816 | ISS | Gene Ontology | calcium ion transport |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0038023 | IBA | Gene Ontology | signaling receptor activity | 2 |
| GO:0015276 | IEA | GOA Database | ligand-gated ion channel activity | |
| GO:0015276 | IBA | Gene Ontology | ligand-gated ion channel activity | 2 |
| GO:0015276 | IEA | InterPro | ligand-gated ion channel activity | |
| GO:0005217 | ISS | Gene Ontology | intracellular ligand-gated ion channel activity | |
| GO:0005515 | IPI | Gene Ontology | protein binding | 3 |
| GO:0008066 | ISS | Gene Ontology | glutamate receptor activity | |
| GO:0005262 | ISS | Gene Ontology | calcium channel activity |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0016020 | IEA | GOA Database | membrane | |
| GO:0016020 | IEA | InterPro | membrane | |
| GO:0016021 | IEA | GOA Database | integral component of membrane | |
| GO:0005886 | ISS, ISM, IBA | Gene Ontology | plasma membrane | 2 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR001320 | Ionotropic glutamate receptor |
| IPR001828 | Receptor, ligand binding region |
| IPR044440 | Plant glutamate receptor, periplasmic ligand-binding domain |
| IPR001638 | Solute-binding protein family 3/N-terminal domain of MltF |
| IPR017103 | Ionotropic glutamate receptor, plant |
| IPR028082 | Periplasmic binding protein-like I |
| Mapman id | Description |
|---|---|
| 24.3.9 | Solute transport.channels.ligand-gated cation channel (GLR) |