Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 0.0e+00 1834.3 937 100.0
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 0.0e+00 1764.2 938 95.8
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 0.0e+00 1691.8 925 93.0
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 0.0e+00 1677.5 939 90.7
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 0.0e+00 1674.4 935 91.2
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 0.0e+00 1641.7 939 89.6
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1619.4 935 88.2
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 0.0e+00 1612.8 935 88.1
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 0.0e+00 1612.8 935 88.1
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1501.5 953 81.5
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 0.0e+00 1474.5 945 79.8
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 0.0e+00 1407.1 945 78.1
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 0.0e+00 1313.9 818 82.6
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1249.6 948 67.6
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1229.5 945 66.0
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1216.4 944 64.9
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1208.4 947 65.0
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1206.4 955 64.9
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1201.4 941 65.2
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1194.1 952 65.2
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1187.2 942 63.9
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1184.1 941 64.7
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1177.5 945 63.6
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1175.6 938 63.4
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1171.8 940 63.3
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1170.6 947 62.8
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1168.7 940 63.1
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1168.7 942 63.1
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1167.5 940 62.7
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1160.6 940 62.8
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1157.1 945 62.0
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1151.7 937 63.2
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1146.3 939 62.1
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1144.8 939 62.0
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1139.4 942 61.4
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1137.1 939 61.6
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1132.1 940 61.7
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 0.0e+00 1120.5 950 59.5
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 0.0e+00 1119.0 949 60.6
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1119.0 943 60.7
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 0.0e+00 1115.9 936 60.5
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1111.3 940 61.2
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1110.5 939 61.0
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1110.1 927 63.4
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1105.1 943 61.0
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 0.0e+00 1101.7 950 60.0
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1100.9 963 59.3
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 0.0e+00 1100.5 936 59.8
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 0.0e+00 1097.4 941 60.6
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 0.0e+00 1097.0 943 60.6
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 0.0e+00 1096.3 924 60.3
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 0.0e+00 1090.9 941 59.9
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1085.5 943 58.9
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 0.0e+00 1083.6 921 59.8
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 0.0e+00 1077.4 988 59.0
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 6.4e-312 1074.3 943 59.5
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 9.6e-311 1070.1 1001 56.7
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 9.6e-311 1070.1 817 66.5
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 6.3e-310 1067.4 963 56.9
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 5.0e-307 1057.7 943 58.2
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 7.2e-306 1053.9 949 57.9
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 1.7e-302 1042.7 938 57.4
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 2.8e-302 1042.0 951 56.0
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 4.9e-302 1041.2 944 56.4
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 4.9e-302 1041.2 953 56.2
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 4.9e-302 1041.2 939 56.8
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 2.4e-301 1038.9 948 56.6
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 4.1e-301 1038.1 941 55.5
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 1.6e-300 1036.2 940 56.4
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 2.0e-300 1035.8 950 57.8
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 6.6e-299 1030.8 937 57.0
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 1.5e-298 1029.6 938 56.5
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 1.6e-297 1026.2 936 56.2
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 2.6e-295 1018.8 936 56.3
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 4.4e-295 1018.1 939 55.9
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 7.5e-295 1017.3 855 61.9
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 2.0e-292 1009.2 940 56.5
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 1.4e-288 996.5 940 55.5
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 1.2e-284 983.4 945 53.7
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 1.8e-280 969.5 906 56.6
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 7.1e-277 957.6 949 53.6
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 1.6e-276 956.4 940 54.8
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 6.0e-276 954.5 810 60.1
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 3.9e-275 951.8 940 54.7
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 7.6e-271 937.6 740 65.5
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 1.2e-268 930.2 938 52.8
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 5.1e-267 924.9 764 61.8
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 1.0e-259 900.6 937 51.2
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 3.8e-238 828.9 690 62.3
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 9.7e-234 814.3 695 60.9
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 1.0e-219 767.7 948 44.1
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 3.7e-217 759.2 923 45.2
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 1.1e-200 704.5 659 55.2
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 2.9e-182 643.3 971 39.9
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 6.0e-175 619.0 866 41.1
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 4.7e-172 609.4 890 39.0
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 1.2e-167 594.7 490 59.6
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 3.1e-147 526.9 876 35.5
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 6.4e-145 519.2 466 61.6
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 4.3e-133 479.9 745 39.6
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 9.6e-133 478.8 423 55.6
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 9.0e-131 472.2 941 31.6
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 1.1e-128 465.3 906 32.1
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 6.7e-126 456.1 391 59.8
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 4.1e-123 446.8 458 54.1
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.0e-118 432.2 443 53.0
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 7.0e-83 313.2 435 44.4
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.2e-78 297.0 258 59.7
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.1e-67 262.7 189 61.9
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 5.1e-49 200.7 351 40.5
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 6.6e-49 200.3 366 39.9
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.1e-40 172.9 350 35.1
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 8.9e-38 163.3 458 29.3
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 2.9e-36 158.3 132 62.1
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 1.9e-32 145.6 119 65.5
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.2e-29 136.3 142 50.0
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 7.9e-26 123.6 303 33.3
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.4e-22 112.1 73 72.6
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 3.1e-22 111.7 73 72.6
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 3.1e-22 111.7 124 51.6
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 9.0e-22 110.2 253 34.8
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.2e-21 109.8 145 45.5
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 5.8e-21 107.5 73 69.9
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 9.9e-21 106.7 73 68.5
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 9.9e-21 106.7 73 68.5
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 2.3e-17 95.5 70 67.1
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.3e-15 89.7 122 42.6
BcaC06g30801 Brassica carinata HOM05D004953 ORTHO05D006193 1.7e-12 79.3 52 84.6
SMO203G0202 Selaginella moellendorffii HOM05D003498 ORTHO05D006193 4.9e-12 77.8 100 43.0
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 8.4e-12 77.0 55 65.5
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 1.4e-11 76.3 46 76.1
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.2e-11 75.1 55 63.6
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 7.1e-11 73.9 55 63.6
FAN14G1607 Fragaria x ananassa HOM05D004953 ORTHO05D006193 1.6e-10 72.8 61 68.9
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.1e-10 72.4 61 50.8
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 6.0e-10 70.9 325 23.1
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 7.9e-10 70.5 61 55.7
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.3e-09 69.7 61 57.4
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 3.0e-09 68.6 61 49.2
TPR.G3742 Trifolium pratense HOM05D004953 ORTHO05D006193 2.5e-08 65.5 38 73.7
FAN24G1763 Fragaria x ananassa HOM05D004953 ORTHO05D006193 5.7e-08 64.3 38 73.7
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.1e-07 62.4 91 36.3


User provided reference genes

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