Gene: AT5G40310

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G40310
  • Transcript Identifier AT5G40310.2
  • Gene Type Coding gene
  • Location Chr5 : 16113272-16116089 : negative

Gene Family Information

  • ID HOM05D001511
  • #Genes/#Species 419/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G40310.2
  • uniprot Q9FNE7

Descriptions

  • Description Exonuclease family protein
  • Computational description Exonuclease family protein; FUNCTIONS IN: zinc ion binding, exonuclease activity, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Exonuclease (InterPro:IPR006055), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337), Zinc finger, C2H2-type (InterPro:IPR007087), Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); BEST Arabidopsis thaliana protein match is: Exonuclease family protein (TAIR:AT3G27970.1); Has 1160 Blast hits to 1160 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 448; Fungi - 364; Plants - 225; Viruses - 0; Other Eukaryotes - 123 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006364
IEA
Gene OntologyrRNA processing
GO:0006364
IEA
InterProrRNA processing
GO:0090305
IEA
GOA Databasenucleic acid phosphodiester bond hydrolysis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0008408
IEA
Gene Ontology3'-5' exonuclease activity
GO:0008408
IEA
InterPro3'-5' exonuclease activity
GO:0004527
IEA
GOA Databaseexonuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR036397 Ribonuclease H superfamily
IPR037431 RNA exonuclease 4, DEDDh 3'-5' exonuclease domain
IPR012337 Ribonuclease H-like superfamily
IPR013520 Exonuclease, RNase T/DNA polymerase III
IPR013087 Zinc finger C2H2-type
Mapman id Description
35.1 not assigned.annotated