Gene: AT5G24400

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G24400
  • Transcript Identifier AT5G24400.1
  • Gene Type Coding gene
  • Location Chr5 : 8330532-8331784 : negative

Gene Family Information

  • ID HOM05D001307
  • #Genes/#Species 481/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G24400.1
  • symbol EMB2024
  • Alias PGL3,6-PHOSPHOGLUCONOLACTONASE 3
  • full_name EMBRYO DEFECTIVE 2024
  • uniprot Q84WW2

Descriptions

  • Description NagB/RpiA/CoA transferase-like superfamily protein
  • Computational description EMBRYO DEFECTIVE 2024 (EMB2024); FUNCTIONS IN: 6-phosphogluconolactonase activity, catalytic activity; INVOLVED IN: defense response to oomycetes, defense response to bacterium, carbohydrate metabolic process, cellular response to redox state, embryo development ending in seed dormancy; LOCATED IN: peroxisome, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glucosamine/galactosamine-6-phosphate isomerase (InterPro:IPR006148), 6-phosphogluconolactonase, DevB-type (InterPro:IPR005900); BEST Arabidopsis thaliana protein match is: 6-phosphogluconolactonase 2 (TAIR:AT3G49360.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006098
IEA
GOA Databasepentose-phosphate shunt
GO:0006098
IEA
InterPropentose-phosphate shunt
GO:0005975
IEA
Gene Ontologycarbohydrate metabolic process
GO:0005975
IEA
InterProcarbohydrate metabolic process
GO:0009051
IBA
Gene Ontologypentose-phosphate shunt, oxidative branch1
GO:0042128
IMP
Gene Ontologynitrate assimilation2
GO:0071461
IMP
Gene Ontologycellular response to redox state3
GO:0042742
IMP
Gene Ontologydefense response to bacterium3
GO:0002229
IMP
Gene Ontologydefense response to oomycetes3
GO:0009793
NAS
Gene Ontologyembryo development ending in seed dormancy

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IPI
Gene Ontologyprotein binding4
GO:0017057
IEA
GOA Database6-phosphogluconolactonase activity
GO:0017057
IDA
IBA
Gene Ontology6-phosphogluconolactonase activity1 3
GO:0017057
IEA
InterPro6-phosphogluconolactonase activity
GO:0016787
IEA
GOA Databasehydrolase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009536
IEA
GOA Databaseplastid
GO:0009536
IDA
Gene Ontologyplastid2
GO:0009570
IDA
GOA Databasechloroplast stroma
GO:0009570
HDA
Gene Ontologychloroplast stroma5
GO:0005777
IEA
GOA Databaseperoxisome
GO:0005777
IDA, HDA
Gene Ontologyperoxisome4 6
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast3 7
GO:0005737
IBA
Gene Ontologycytoplasm1
GO:0005829
RCA
Gene Ontologycytosol8

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR005900 6-phosphogluconolactonase, DevB-type
IPR006148 Glucosamine/galactosamine-6-phosphate isomerase
IPR037171 NagB/RpiA transferase-like
IPR039104 6-Phosphogluconolactonase
Mapman id Description
3.9.1.2 Carbohydrate metabolism.oxidative pentose phosphate pathway.oxidative phase.6-phosphogluconolactonase