Gene: AT3G61420

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G61420
  • Transcript Identifier AT3G61420.1
  • Gene Type Coding gene
  • Location Chr3 : 22727235-22731760 : negative

Gene Family Information

  • ID HOM05D003810
  • #Genes/#Species 181/98
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G61420.1
  • uniprot Q9M322

Descriptions

  • Description BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins)
  • Computational description BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins); CONTAINS InterPro DOMAIN/s: Kelch related (InterPro:IPR013089), BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (TAIR:AT1G55750.1); Has 378 Blast hits to 374 proteins in 164 species: Archae - 0; Bacteria - 0; Metazoa - 158; Fungi - 125; Plants - 65; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006289
IEA
Gene Ontologynucleotide-excision repair
GO:0006289
IEA
InterPronucleotide-excision repair
GO:0006351
IEA
Gene Ontologytranscription, DNA-templated
GO:0006351
IEA
InterProtranscription, DNA-templated
GO:0006360
IBA
Gene Ontologytranscription by RNA polymerase I1
GO:0006281
IEA
GOA DatabaseDNA repair
GO:0006281
IBA
Gene OntologyDNA repair1
GO:0006366
IBA
Gene Ontologytranscription by RNA polymerase II1
GO:0070816
IBA
Gene Ontologyphosphorylation of RNA polymerase II C-terminal domain1
GO:0006974
IEA
GOA Databasecellular response to DNA damage stimulus

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0000439
IBA
IEA
Gene Ontologytranscription factor TFIIH core complex1
GO:0000439
IEA
InterProtranscription factor TFIIH core complex
GO:0005634
IEA
GOA Databasenucleus
GO:0005634
ISM
Gene Ontologynucleus
GO:0005675
IBA
Gene Ontologytranscription factor TFIIH holo complex1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR027079 TFIIH subunit Tfb1/GTF2H1
IPR035925 BSD domain superfamily
IPR005607 BSD domain
IPR013876 TFIIH p62 subunit, N-terminal
Mapman id Description
14.6.3.2.4 DNA damage response.nucleotide excision repair (NER).multi-functional TFIIh complex.core module.subunit TFB1
15.3.3.5.1.4 RNA biosynthesis.RNA polymerase II-dependent transcription.transcription initiation.TFIIh basal transcription factor complex.core module.component TFB1