Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 0.0e+00 1123.6 580 100.0
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 2.2e-297 1025.0 580 91.6
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 4.5e-290 1000.7 577 88.9
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 4.2e-288 994.2 577 87.9
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 8.0e-287 989.9 577 87.9
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.4e-286 989.2 574 87.8
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.8e-281 971.1 577 86.1
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 6.5e-281 970.3 574 86.2
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 9.4e-280 966.5 575 86.3
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 1.4e-278 962.6 575 85.9
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 1.4e-278 962.6 575 85.9
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 5.7e-277 957.2 577 84.9
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 1.0e-273 946.4 576 84.7
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 2.2e-273 945.3 576 84.5
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 3.7e-260 901.4 520 88.5
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 1.4e-246 856.3 580 77.2
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 6.0e-210 734.6 581 65.6
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 2.8e-207 725.7 553 68.2
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 1.7e-204 716.5 579 64.8
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.2e-204 716.1 581 63.7
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 2.7e-202 709.1 582 63.4
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 2.1e-199 699.5 578 63.0
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 6.0e-194 681.4 583 60.9
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 7.9e-194 681.0 587 62.0
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 1.9e-192 676.4 587 61.5
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.8e-190 669.8 581 60.2
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 5.3e-190 668.3 590 60.3
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 4.5e-189 665.2 585 60.5
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 1.9e-187 659.8 590 60.2
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 2.1e-186 656.4 593 59.9
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 2.7e-186 656.0 587 59.3
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 2.3e-185 652.9 587 58.8
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 2.3e-185 652.9 578 60.0
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 3.9e-185 652.1 587 58.8
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 5.1e-185 651.7 599 59.3
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.1e-184 650.6 587 59.3
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.3e-184 649.0 587 60.0
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 3.1e-182 642.5 584 58.7
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.4e-181 639.0 613 57.6
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 2.9e-180 636.0 587 57.6
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 5.5e-179 631.7 584 58.0
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 2.1e-178 629.8 585 58.1
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 2.7e-178 629.4 587 59.3
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.8e-177 626.7 558 62.9
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 1.3e-175 620.5 585 57.6
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 2.8e-175 619.4 585 58.3
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 8.2e-175 617.8 542 60.3
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 8.2e-175 617.8 567 59.4
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.1e-174 617.5 585 57.4
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.4e-174 617.1 587 58.3
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.8e-174 616.7 584 57.5
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 3.1e-174 615.9 584 57.4
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 3.1e-174 615.9 591 56.7
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 4.5e-173 612.1 583 56.6
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 5.9e-173 611.7 710 50.6
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 1.7e-172 610.1 585 56.8
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 2.2e-172 609.8 597 56.6
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 5.0e-172 608.6 618 55.7
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 1.1e-171 607.4 588 56.8
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 9.4e-171 604.4 580 56.6
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 1.2e-170 604.0 579 56.8
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 1.6e-170 603.6 585 56.2
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 3.6e-170 602.4 585 56.1
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.3e-169 599.7 586 57.5
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.3e-169 599.7 719 49.4
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 3.9e-169 599.0 585 56.1
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 1.5e-168 597.0 581 55.4
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 2.0e-168 596.7 536 59.3
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 3.3e-168 595.9 612 53.6
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 5.7e-168 595.1 591 56.5
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 5.7e-168 595.1 652 52.0
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 7.4e-168 594.7 582 55.5
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 9.7e-168 594.3 588 55.6
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 4.8e-167 592.0 581 55.4
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 1.1e-166 590.9 582 55.7
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 4.1e-166 589.0 590 53.7
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 1.2e-165 587.4 581 55.9
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 1.3e-164 583.9 529 59.7
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 1.7e-164 583.6 581 54.7
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.5e-163 579.7 556 61.2
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 2.5e-163 579.7 592 54.9
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 2.7e-162 576.2 581 54.7
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 4.7e-162 575.5 590 53.2
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.4e-161 573.9 541 59.0
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 1.5e-160 570.5 602 53.7
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 2.6e-160 569.7 700 48.7
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 3.1e-158 562.8 690 49.4
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 5.3e-158 562.0 590 51.4
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 3.8e-156 555.8 595 53.8
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 5.0e-156 555.4 588 53.1
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 8.5e-156 554.7 582 52.9
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.0e-153 547.7 532 56.4
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.0e-153 546.2 357 79.3
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 8.8e-153 544.7 594 52.2
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 5.7e-152 542.0 598 52.5
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 9.8e-152 541.2 581 52.3
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.6e-149 533.9 586 53.8
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 3.5e-149 532.7 581 52.3
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 3.5e-149 532.7 587 50.8
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 2.3e-148 530.0 580 52.1
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.4e-145 520.8 592 50.8
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 1.4e-145 520.8 650 48.8
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 1.4e-142 510.8 427 62.5
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 1.6e-141 507.3 470 59.6
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 1.0e-140 504.6 476 58.0
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 3.9e-140 502.7 469 62.0
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.6e-140 501.5 597 49.6
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 2.1e-130 470.3 585 47.4
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 5.2e-129 465.7 590 46.6
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 7.5e-128 461.8 482 55.2
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 6.4e-127 458.8 355 66.5
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.9e-126 457.2 479 52.0
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 2.6e-120 436.8 592 41.2
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 5.8e-120 435.6 405 58.0
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 7.1e-118 428.7 395 59.2
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 7.8e-117 425.2 438 55.5
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 5.1e-116 422.5 594 43.3
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 2.8e-114 416.8 465 48.8
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 2.4e-113 413.7 382 58.4
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 1.3e-108 397.9 312 68.9
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 3.9e-108 396.4 359 60.4
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.3e-106 391.3 359 59.9
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 1.3e-106 391.3 460 50.2
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 2.0e-96 357.5 461 46.6
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 2.4e-94 350.5 339 56.3
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 3.3e-91 340.1 425 49.9
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 7.1e-86 322.4 579 35.9
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.7e-79 301.2 466 43.3
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 1.8e-76 291.2 227 67.0
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.3e-76 290.8 440 43.4
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 1.0e-63 248.8 202 66.3
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.7e-63 248.1 294 49.7
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 6.5e-63 246.1 206 59.7
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.7e-61 240.0 376 41.0
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 2.2e-58 231.1 213 57.3
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 5.3e-57 226.5 501 37.3
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 3.5e-56 223.8 175 62.3
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.0e-55 222.2 204 55.9
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 5.0e-55 219.9 289 43.9
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 1.8e-52 211.5 225 48.9
TAR627G1127 Trochodendron aralioides HOM05D003810 ORTHO05D004416 1.8e-49 201.4 152 64.5
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 3.5e-48 197.2 199 54.3
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.1e-46 192.2 204 51.5
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.0e-44 184.1 338 39.6
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.8e-41 174.9 166 58.4
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 2.4e-41 174.5 269 43.5
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 1.2e-40 172.2 166 57.8
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 8.5e-39 166.0 163 53.4
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 7.2e-38 162.9 119 67.2
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 8.8e-36 156.0 247 40.5
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 2.6e-35 154.5 222 44.6
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 2.4e-33 147.9 190 48.9
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 3.5e-24 117.5 135 49.6
SMO031G0001 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 6.6e-23 113.2 122 42.6
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 5.2e-20 103.6 80 63.8
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 3.4e-19 100.9 173 38.7
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 7.5e-19 99.8 184 39.1
TPR.G30194 Trifolium pratense HOM05D003810 ORTHO05D004416 2.9e-18 97.8 161 39.1
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 3.7e-18 97.4 77 63.6
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 8.3e-18 96.3 78 61.5
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 1.9e-17 95.1 73 64.4
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 2.4e-17 94.7 97 50.5
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 4.1e-17 94.0 81 58.0
TAR629G2180 Trochodendron aralioides HOM05D003810 ORTHO05D004416 9.2e-17 92.8 65 67.7
SalBow3G3831 Salvia bowleyana HOM05D003810 ORTHO05D004416 1.2e-16 92.4 131 42.7
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 1.7e-15 88.6 157 36.9
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 2.3e-15 88.2 626 22.5
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 9.5e-14 82.8 532 22.6
SHI21696 Sapria himalayana HOM05D003810 ORTHO05D004416 1.6e-13 82.0 108 44.4
ClCG09G022970 Citrullus lanatus HOM05D003810 ORTHO05D004416 6.2e-13 80.1 62 62.9
Sabra05G0051600 Salix brachista HOM05D003810 ORTHO05D004416 8.1e-13 79.7 202 33.2
A07p35570 Brassica napus HOM05D003810 ORTHO05D004416 1.4e-12 79.0 67 68.7
BraA07t31145Z Brassica rapa HOM05D003810 ORTHO05D004416 6.8e-12 76.6 61 72.1
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 2.9e-10 71.2 77 48.1
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 3.7e-10 70.9 53 66.0
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 4.9e-10 70.5 58 63.8
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 6.4e-10 70.1 56 60.7
SalBow3G0229 Salvia bowleyana HOM05D003810 ORTHO05D004416 2.1e-08 65.1 75 45.3
Cre10.g466550 Chlamydomonas reinhardtii HOM05D003810 ORTHO05D004416 1.0e-07 62.8 200 27.0
MD08G1246500 Malus domestica HOM05D003810 ORTHO05D004416 8.6e-07 59.7 35 82.9
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.1e-06 59.3 41 65.9
CAN.G1034.2 Capsicum annuum HOM05D000222 ORTHO05D011077 2.5e-06 58.2 271 26.2
TPR.G30768 Trifolium pratense HOM05D003810 ORTHO05D004416 2.5e-06 58.2 56 53.6
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 3.3e-06 57.8 95 41.1
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 5.6e-06 57.0 131 34.4
Hund17711 Selenicereus undatus HOM05D003810 ORTHO05D004416 7.3e-06 56.6 43 62.8


User provided reference genes

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