Gene: AT3G16230

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G16230
  • Transcript Identifier AT3G16230.6
  • Gene Type Coding gene
  • Location Chr3 : 5500563-5502755 : positive

Gene Family Information

  • ID HOM05D001353
  • #Genes/#Species 464/100
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G16230.6
  • uniprot F4J1H2

Descriptions

  • Description Putative eukaryotic LigT
  • Computational description Predicted eukaryotic LigT; FUNCTIONS IN: RNA binding, catalytic activity; INVOLVED IN: RNA metabolic process, regulation of transcription; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:IPR004087), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088), Predicted eukaryotic LigT (InterPro:IPR009210), RNA ligase/cyclic nucleotide phosphodiesterase (InterPro:IPR009097), Protein kinase A anchor protein, nuclear localisation signal domain (InterPro:IPR019510); BEST Arabidopsis thaliana protein match is: Predicted eukaryotic LigT (TAIR:AT3G16220.1); Has 263 Blast hits to 258 proteins in 85 species: Archae - 0; Bacteria - 0; Metazoa - 179; Fungi - 13; Plants - 46; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0006355
IBA
Gene Ontologyregulation of transcription, DNA-templated1

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
Gene OntologyRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0003676
IEA
GOA Databasenucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0016791
ISO
PLAZA Homology (enrichment)phosphatase activity HOM05D001353

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005739
IDA
GOA Databasemitochondrion
GO:0005739
HDA
Gene Ontologymitochondrion2
GO:0005634
IBA
Gene Ontologynucleus1

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR019510 Protein kinase A anchor protein, nuclear localisation signal domain
IPR036612 K Homology domain, type 1 superfamily
IPR009210 Activating signal cointegrator 1 complex subunit 1
IPR004087 K Homology domain
IPR004088 K Homology domain, type 1
Mapman id Description
35.1 not assigned.annotated