Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 3.8e-205 718.0 373 100.0
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 7.9e-171 604.0 371 86.5
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 2.0e-166 589.3 371 82.7
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 2.3e-154 549.3 373 78.0
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.4e-143 512.7 365 75.9
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 8.5e-141 504.2 372 73.9
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 2.1e-131 473.0 353 72.5
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 5.9e-118 428.3 353 68.6
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 1.7e-117 426.8 361 66.5
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 6.6e-117 424.9 387 63.3
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 1.2e-115 420.6 361 65.4
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 2.3e-114 416.4 360 66.1
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 6.2e-107 391.7 452 53.5
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 2.3e-98 363.2 254 76.4
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 4.1e-95 352.4 412 51.2
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 2.3e-93 346.7 386 52.3
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 3.0e-93 346.3 417 51.1
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 1.1e-92 344.4 409 50.4
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 1.5e-92 344.0 427 50.1
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 3.6e-91 339.3 426 48.1
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 1.4e-90 337.4 417 49.2
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 1.8e-90 337.0 399 50.4
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 5.2e-90 335.5 408 50.2
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 5.2e-90 335.5 409 47.9
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 6.8e-90 335.1 419 48.2
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 1.5e-89 334.0 397 51.1
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.0e-89 333.6 369 54.2
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 7.6e-89 331.6 418 49.3
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 9.9e-89 331.3 406 49.8
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 1.3e-88 330.9 425 47.8
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 4.9e-88 328.9 391 51.2
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 1.4e-87 327.4 358 53.1
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.9e-87 327.0 348 54.0
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 1.9e-87 327.0 387 49.4
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 4.1e-87 325.9 409 48.4
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 5.4e-87 325.5 356 51.4
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 9.2e-87 324.7 390 48.5
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 2.7e-86 323.2 422 47.9
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 3.5e-86 322.8 414 48.8
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 4.6e-86 322.4 424 46.9
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 7.8e-86 321.6 394 49.5
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 1.0e-85 321.2 410 47.3
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 3.0e-85 319.7 389 50.1
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 3.9e-85 319.3 411 46.2
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 5.6e-84 315.5 385 50.9
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 9.6e-84 314.7 428 46.7
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 2.1e-83 313.5 374 50.5
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 2.1e-83 313.5 426 46.0
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 3.6e-83 312.8 381 49.3
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 4.7e-83 312.4 312 56.7
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.8e-82 310.5 406 46.1
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.4e-81 306.2 405 46.9
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 5.8e-81 305.4 434 45.9
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 5.8e-81 305.4 411 46.5
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 2.2e-80 303.5 422 45.5
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.8e-80 302.8 374 49.2
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 1.9e-79 300.4 373 48.5
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 4.6e-78 295.8 402 47.5
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 6.0e-78 295.4 385 45.7
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 8.7e-77 291.6 425 44.0
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 3.3e-76 289.7 379 47.2
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 1.3e-75 287.7 322 50.6
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.3e-75 287.7 403 45.9
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 2.1e-75 287.0 363 47.1
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 3.1e-74 283.1 401 44.6
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 5.3e-74 282.3 358 48.3
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 5.3e-74 282.3 434 42.2
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.2e-73 281.2 411 45.3
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 1.5e-73 280.8 362 47.8
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 1.5e-73 280.8 382 46.3
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 1.3e-72 277.7 381 44.9
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 2.9e-72 276.6 396 43.7
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 3.8e-72 276.2 372 46.2
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.2e-70 271.2 305 50.5
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 2.1e-70 270.4 406 44.8
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.7e-70 270.0 344 50.3
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.0e-69 268.1 346 49.1
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.8e-69 267.3 351 46.7
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 1.8e-69 267.3 427 41.9
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 2.3e-69 266.9 252 57.9
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 4.8e-67 259.2 262 53.4
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 6.2e-67 258.8 368 46.2
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 8.1e-67 258.5 364 44.8
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 1.4e-66 257.7 356 44.9
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.2e-65 254.6 351 44.7
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 9.9e-65 251.5 398 42.2
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 6.4e-64 248.8 325 46.5
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 1.1e-63 248.1 356 43.3
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 3.2e-63 246.5 231 57.1
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 5.5e-63 245.7 420 39.3
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.7e-62 243.4 261 51.3
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.0e-61 241.5 301 49.2
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 6.7e-61 238.8 377 44.0
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 2.5e-60 236.9 460 37.2
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 3.2e-55 219.9 257 49.0
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 3.8e-48 196.4 235 47.2
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 3.2e-47 193.4 312 38.1
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 4.6e-46 189.5 242 50.4
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.8e-45 187.6 198 51.5
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 3.3e-44 183.3 273 38.8
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 4.5e-41 172.9 213 47.9
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.9e-40 170.2 213 47.9
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.5e-40 169.1 120 70.0
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 1.6e-38 164.5 316 35.8
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 2.1e-38 164.1 207 45.4
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 2.1e-38 164.1 217 45.2
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 3.3e-36 156.8 217 44.2
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 4.4e-36 156.4 179 50.8
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 4.4e-36 156.4 217 43.8
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 7.4e-36 155.6 187 47.1
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 2.2e-35 154.1 219 43.4
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 2.8e-35 153.7 95 76.8
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 4.8e-35 152.9 178 48.3
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.3e-35 152.5 177 50.8
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 9.1e-34 148.7 178 46.6
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 9.1e-34 148.7 253 43.5
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.2e-33 148.3 189 46.0
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 2.0e-33 147.5 178 47.8
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 6.5e-32 142.5 245 34.3
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 8.0e-30 135.6 356 28.4
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 8.8e-29 132.1 133 53.4
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 4.4e-28 129.8 143 49.0
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 4.1e-26 123.2 178 39.3
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.3e-26 122.9 152 46.7
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 2.0e-25 120.9 89 62.9
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 2.2e-24 117.5 115 52.2
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-23 115.2 320 27.5
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 7.2e-23 112.5 112 50.9
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 1.8e-21 107.8 74 68.9
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 2.3e-21 107.5 116 47.4
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 2.0e-20 104.4 185 34.6
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 1.7e-19 101.3 69 69.6
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 6.3e-19 99.4 92 55.4
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 7.7e-17 92.4 75 58.7
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 3.8e-16 90.1 122 45.9
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 6.5e-16 89.4 73 57.5
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.9e-15 87.8 121 45.5
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 5.5e-15 86.3 91 46.2
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 7.2e-15 85.9 75 54.7
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 2.1e-14 84.3 75 54.7
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 4.0e-13 80.1 280 25.4
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.1e-10 72.0 36 91.7
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 3.5e-09 67.0 126 42.1
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 6.6e-08 62.8 34 82.4
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 6.6e-08 62.8 112 33.0
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 5.5e-07 59.7 30 90.0


User provided reference genes

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