Gene: AT3G15140

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT3G15140
  • Transcript Identifier AT3G15140.1
  • Gene Type Coding gene
  • Location Chr3 : 5099712-5101717 : negative

Gene Family Information

  • ID HOM05D006724
  • #Genes/#Species 119/92
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT3G15140.1
  • uniprot Q8W566

Descriptions

  • Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein
  • Computational description Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: exonuclease activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Exonuclease, RNase T/DNA polymerase III (InterPro:IPR013520); Has 576 Blast hits to 576 proteins in 123 species: Archae - 0; Bacteria - 44; Metazoa - 336; Fungi - 16; Plants - 80; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0035194
IMP
Gene Ontologypost-transcriptional gene silencing by RNA1
GO:0090065
IMP
Gene Ontologyregulation of production of siRNA involved in RNA interference1
GO:0000467
IBA
Gene Ontologyexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)2
GO:0090502
IEA
GOA DatabaseRNA phosphodiester bond hydrolysis, endonucleolytic

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003676
IEA
Gene Ontologynucleic acid binding
GO:0003676
IEA
InterPronucleic acid binding
GO:0016891
IMP
Gene Ontologyendoribonuclease activity, producing 5'-phosphomonoesters1
GO:0000175
IBA
Gene Ontology3'-5'-exoribonuclease activity2
GO:0046872
IEA
GOA Databasemetal ion binding
GO:0016787
IEA
GOA Databasehydrolase activity
GO:0004527
IEA
GOA Databaseexonuclease activity
GO:0004518
IEA
GOA Databasenuclease activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005737
ISM
Gene Ontologycytoplasm
GO:0009507
ISM
Gene Ontologychloroplast
GO:0005739
IDA
GOA Databasemitochondrion
GO:0005739
HDA
Gene Ontologymitochondrion3

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR013520 Exonuclease, RNase T/DNA polymerase III
IPR012337 Ribonuclease H-like superfamily
IPR036397 Ribonuclease H superfamily
Mapman id Description
16.11.1.6 RNA processing.organelle machinery.ribonuclease activities.exoribonuclease (ERIL)