Gene: AT3G03110
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT3G03110
- Transcript Identifier AT3G03110.1
- Gene Type Coding gene
- Location Chr3 : 708966-716879 : positive
Gene Family Information
- ID HOM05D002636
- #Genes/#Species 260/99
- Phylogenetic origin
- ID ORTHO05D003490
- #Genes/#Species 221/99
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid AT3G03110.1
- symbol XPO1B
- Alias CRM1B
- uniprot F4IZR5
Descriptions
- Description exportin 1B
- Computational description exportin 1B (XPO1B); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: pollen germination, protein import into nucleus, docking, pollen tube growth, embryo sac development, pollen development; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Exportin 1, C-terminal (InterPro:IPR014877), Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: exportin 1A (TAIR:AT5G17020.1); Has 1366 Blast hits to 1341 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 780; Fungi - 258; Plants - 127; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0006886 | IEA | GOA Database | intracellular protein transport | |
GO:0006886 | IEA | InterPro | intracellular protein transport | |
GO:0006611 | IEA | Gene Ontology | protein export from nucleus | |
GO:0006611 | IEA | InterPro | protein export from nucleus | |
GO:0015031 | IEA | GOA Database | protein transport | |
GO:0051028 | IEA | GOA Database | mRNA transport | |
GO:0000055 | IBA | Gene Ontology | ribosomal large subunit export from nucleus | 1 |
GO:0000056 | IBA | Gene Ontology | ribosomal small subunit export from nucleus | 1 |
GO:0009860 | IGI | Gene Ontology | pollen tube growth | 2 |
GO:0009846 | IGI | Gene Ontology | pollen germination | 2 |
GO:0009555 | IGI | Gene Ontology | pollen development | 2 |
GO:0009553 | IGI | Gene Ontology | embryo sac development | 2 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0031267 | IEA | Gene Ontology | small GTPase binding | |
GO:0031267 | IEA | InterPro | small GTPase binding | |
GO:0005049 | IEA | GOA Database | nuclear export signal receptor activity | |
GO:0005049 | IBA | Gene Ontology | nuclear export signal receptor activity | 1 |
GO:0005049 | IEA | InterPro | nuclear export signal receptor activity |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0005643 | IEA | GOA Database | nuclear pore | |
GO:0005634 | IEA | GOA Database | nucleus | |
GO:0005634 | IBA | Gene Ontology | nucleus | 1 |
GO:0016020 | IEA | GOA Database | membrane | |
GO:0009506 | IDA | GOA Database | plasmodesma | |
GO:0009506 | HDA | Gene Ontology | plasmodesma | 3 |
GO:0031965 | IEA | GOA Database | nuclear membrane | |
GO:0005737 | IBA | Gene Ontology | cytoplasm | 1 |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
InterPro | Description |
---|---|
IPR014877 | Exportin-1, C-terminal |
IPR011989 | Armadillo-like helical |
IPR045065 | Exportin-1/5 |
IPR041123 | Chromosome region maintenance repeat |
IPR040485 | Exportin-1, repeat 3 |
IPR041235 | Exportin-1, repeat 2 |
IPR001494 | Importin-beta, N-terminal domain |
IPR013598 | Exportin-1/Importin-beta-like |
IPR016024 | Armadillo-type fold |
Mapman id | Description |
---|---|
23.5.1.2.9 | Protein translocation.nucleus.nucleocytoplasmic transport.cargo receptor activities.export karyopherin (XPO1) |