Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT2G27900 Arabidopsis thaliana HOM05D004020 ORTHO05D004735 0.0e+00 2184.5 1125 100.0
AL4G22350 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 2068.1 1125 95.2
Carub.0004s0864 Capsella rubella HOM05D004020 ORTHO05D004735 0.0e+00 2001.9 1133 91.7
Thhalv10016162m.g Eutrema salsugineum HOM05D004020 ORTHO05D004735 0.0e+00 1904.8 1136 87.8
Sp4g10720 Schrenkiella parvula HOM05D004020 ORTHO05D004735 0.0e+00 1901.7 1137 88.0
BcaB01g03084 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1885.2 1130 88.0
Aa31LG5G8160 Aethionema arabicum HOM05D004020 ORTHO05D004735 0.0e+00 1872.1 1130 85.9
A03p26460 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1867.0 1132 87.4
BcaC01g04955 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1859.3 1131 87.1
C03p31750 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1858.6 1133 87.6
BolC3t15517H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1848.6 1137 86.6
BraA04t17688Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1819.7 1079 87.7
A04p21190 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1792.3 1079 86.9
BolC4t27237H Brassica oleracea HOM05D004020 ORTHO05D004735 0.0e+00 1791.9 1082 86.4
BcaC02g08224 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1791.2 1082 86.3
C04p57020 Brassica napus HOM05D004020 ORTHO05D004735 0.0e+00 1771.9 1081 85.9
BcaB06g28175 Brassica carinata HOM05D004020 ORTHO05D004735 0.0e+00 1758.8 1072 86.2
THA.LOC104826398 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1724.5 1129 80.5
THA.LOC104800567 Tarenaya hassleriana HOM05D004020 ORTHO05D004735 0.0e+00 1685.6 1136 78.7
CARHR120590 Cardamine hirsuta HOM05D004020 ORTHO05D004735 0.0e+00 1619.0 934 89.3
Thecc.09G295800 Theobroma cacao HOM05D004020 ORTHO05D004735 0.0e+00 1471.8 1127 69.8
Manes.11G154000 Manihot esculenta HOM05D004020 ORTHO05D004735 0.0e+00 1467.2 1143 68.4
Gorai.009G089000 Gossypium raimondii HOM05D004020 ORTHO05D004735 0.0e+00 1446.4 1127 68.9
Glyma.11G191100 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1442.6 1140 68.2
Glyma.12G083200 Glycine max HOM05D004020 ORTHO05D004735 0.0e+00 1440.2 1142 68.0
Cfa010130 Carpinus fangiana HOM05D004020 ORTHO05D004735 0.0e+00 1432.9 1154 66.9
CiPaw.14G105600 Carya illinoinensis HOM05D004020 ORTHO05D004735 0.0e+00 1429.1 1148 67.2
Sabra04G0148500 Salix brachista HOM05D004020 ORTHO05D004735 0.0e+00 1429.1 1131 68.1
Duzib168G0446 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1427.2 1129 68.2
Lj3g0000902 Lotus japonicus HOM05D004020 ORTHO05D004735 0.0e+00 1426.4 1145 67.2
COL.COLO4_19229 Corchorus olitorius HOM05D004020 ORTHO05D004735 0.0e+00 1424.8 1126 67.7
Atru.chr3.3492 Acer truncatum HOM05D004020 ORTHO05D004735 0.0e+00 1421.4 1167 66.1
Gohir.D05G087200 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1416.0 1127 67.7
TWI75G0197 Tripterygium wilfordii HOM05D004020 ORTHO05D004735 0.0e+00 1415.6 1148 66.8
Potri.009G002900 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1414.8 1136 67.4
Gohir.D07G110000 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1413.3 1126 67.4
Ca_19329_v3 Cicer arietinum L. HOM05D004020 ORTHO05D004735 0.0e+00 1410.2 1141 66.0
Psat7g191400 Pisum sativum HOM05D004020 ORTHO05D004735 0.0e+00 1407.1 1143 66.6
Potri.001G212600 Populus trichocarpa HOM05D004020 ORTHO05D004735 0.0e+00 1406.7 1133 67.3
Medtr4g056510 Medicago truncatula HOM05D004020 ORTHO05D004735 0.0e+00 1403.3 1142 67.1
Ciclev10027713m.g Citrus clementina HOM05D004020 ORTHO05D004735 0.0e+00 1402.1 1138 67.0
Lalb_Chr19g0136831 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1402.1 1138 66.3
Gohir.A05G084400 Gossypium hirsutum HOM05D004020 ORTHO05D004735 0.0e+00 1401.0 1139 66.6
TAR633G0695 Trochodendron aralioides HOM05D004020 ORTHO05D004735 0.0e+00 1395.9 1148 65.4
TPR.G35043 Trifolium pratense HOM05D004020 ORTHO05D004735 0.0e+00 1395.6 1146 65.4
MD03G1129700 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1392.1 1145 66.5
MD11G1151500 Malus domestica HOM05D004020 ORTHO05D004735 0.0e+00 1389.0 1145 66.1
CSS0033419 Camellia sinensis var. sinensis HOM05D004020 ORTHO05D004735 0.0e+00 1383.6 1146 65.2
Prupe.6G114700 Prunus persica HOM05D004020 ORTHO05D004735 0.0e+00 1380.2 1141 65.8
RcHm_v2.0_Chr5g0056331 Rosa chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1374.8 1139 65.2
MELO3C004814.2 Cucumis melo HOM05D004020 ORTHO05D004735 0.0e+00 1374.4 1124 65.5
CsaV3_1G014440 Cucumis sativus L. HOM05D004020 ORTHO05D004735 0.0e+00 1374.0 1122 65.5
Duzib150G0506 Durio zibethinus HOM05D004020 ORTHO05D004735 0.0e+00 1374.0 1127 66.7
Phvul.011G088000 Phaseolus vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1370.9 1136 65.7
Lalb_Chr01g0004661 Lupinus albus HOM05D004020 ORTHO05D004735 0.0e+00 1367.4 1138 65.0
PGR102G0426 Punica granatum HOM05D004020 ORTHO05D004735 0.0e+00 1365.1 1126 66.2
Sed0021294 Sechium edule HOM05D004020 ORTHO05D004735 0.0e+00 1362.8 1125 64.4
FvH4_3g30380 Fragaria vesca HOM05D004020 ORTHO05D004735 0.0e+00 1362.4 1141 65.9
Actinidia07194 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1359.0 1146 64.1
FAN21G0469 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1350.1 1136 65.2
FAN11G1674 Fragaria x ananassa HOM05D004020 ORTHO05D004735 0.0e+00 1346.6 1162 64.5
Actinidia24157 Actinidia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1340.1 1147 64.0
Rhsim13G0102300 Rhododendron simsii HOM05D004020 ORTHO05D004735 0.0e+00 1339.3 1146 62.7
Nn2g13902 Nelumbo nucifera HOM05D004020 ORTHO05D004735 0.0e+00 1317.8 1114 63.4
Sopen11g026290 Solanum pennellii HOM05D004020 ORTHO05D004735 0.0e+00 1292.7 1127 62.7
GSVIVG01031444001 Vitis vinifera HOM05D004020 ORTHO05D004735 0.0e+00 1289.2 1078 64.8
CAN.G644.49 Capsicum annuum HOM05D004020 ORTHO05D004735 0.0e+00 1280.0 1121 61.8
AL4G12830 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 0.0e+00 1276.5 889 80.0
Aqoxy2G01562 Aquilegia oxysepala HOM05D004020 ORTHO05D004735 0.0e+00 1272.3 1096 63.0
PSO339G0247 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1270.4 1103 62.3
arahy.Tifrunner.gnm1.ann1.MMVL4X Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1268.8 1146 61.1
PSO801G0568 Papaver somniferum HOM05D004020 ORTHO05D004735 0.0e+00 1268.4 1103 62.3
Nitab4.5_0000173g0340 Nicotiana tabacum HOM05D004020 ORTHO05D004735 0.0e+00 1262.7 1153 60.5
vmacro03245 Vaccinium macrocarpon HOM05D004020 ORTHO05D004735 0.0e+00 1262.7 1187 58.2
arahy.Tifrunner.gnm1.ann1.533Y7U Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1260.0 1155 60.3
Sc06g0008980 Simmondsia chinensis HOM05D004020 ORTHO05D004735 0.0e+00 1258.0 1095 62.6
MSTRG.18711 Avicennia marina HOM05D004020 ORTHO05D004735 0.0e+00 1253.0 1152 60.9
Cc01_g10110 Coffea canephora HOM05D004020 ORTHO05D004735 0.0e+00 1253.0 1101 61.6
HanXRQChr14g0451831 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1250.3 1098 61.6
EL10Ac9g20998 Beta vulgaris HOM05D004020 ORTHO05D004735 0.0e+00 1242.3 1149 59.5
ECA238G2607 Erigeron canadensis HOM05D004020 ORTHO05D004735 0.0e+00 1242.3 1082 62.2
Migut.D02305 Erythranthe guttata HOM05D004020 ORTHO05D004735 0.0e+00 1233.0 1157 60.6
Lsat_1_v5_gn_6_42101 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1219.9 1139 59.5
BraA03t11860Z Brassica rapa HOM05D004020 ORTHO05D004735 0.0e+00 1215.7 785 84.8
HanXRQChr02g0055251 Helianthus annuus HOM05D004020 ORTHO05D004735 0.0e+00 1184.5 1125 58.1
CDE08G1223 Ceratophyllum demersum HOM05D004020 ORTHO05D004735 0.0e+00 1182.5 1086 60.2
arahy.Tifrunner.gnm1.ann1.PN7A9Z Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1176.8 929 66.3
arahy.Tifrunner.gnm1.ann1.B084HG Arachis hypogaea HOM05D004020 ORTHO05D004735 0.0e+00 1176.0 930 66.2
Eucgr.B03912 Eucalyptus grandis HOM05D004020 ORTHO05D004735 0.0e+00 1159.4 1024 63.8
ATR1158G033 Amborella trichopoda HOM05D004020 ORTHO05D004735 0.0e+00 1142.9 1079 58.2
Oeu007301.5 Olea europaea HOM05D004020 ORTHO05D004735 0.0e+00 1125.2 1298 51.1
Lsat_1_v5_gn_2_99000 Lactuca sativa HOM05D004020 ORTHO05D004735 0.0e+00 1101.3 1135 56.4
Os10g0546300 Oryza sativa ssp. japonica HOM05D004020 ORTHO05D004735 0.0e+00 1097.4 1086 55.5
Zm00001eb022740 Zea mays HOM05D004020 ORTHO05D004735 0.0e+00 1078.9 1085 55.4
SGA_v2.0_scaffold27G11582 Striga asiatica HOM05D004020 ORTHO05D004735 0.0e+00 1077.0 1381 48.5
Hund07762 Selenicereus undatus HOM05D004020 ORTHO05D004735 1.6e-304 1049.7 1097 55.0
ClCG01G012850 Citrullus lanatus HOM05D004020 ORTHO05D004735 6.9e-303 1044.3 958 61.7
CANSAT64G0934 Cannabis sativa HOM05D004020 ORTHO05D004735 9.0e-303 1043.9 1030 58.4
MBI18_g10967_MAGBIO Magnolia biondii HOM05D004020 ORTHO05D004735 5.5e-300 1034.6 1097 53.4
AUR62024038 Chenopodium quinoa HOM05D004020 ORTHO05D004735 2.7e-299 1032.3 1125 53.9
DCAR_031639 Daucus carota HOM05D004020 ORTHO05D004735 3.6e-275 952.2 929 57.8
Hund00854 Selenicereus undatus HOM05D004020 ORTHO05D004735 2.4e-271 939.5 1028 54.2
Peaxi162Scf00150g00916 Petunia axillaris HOM05D004020 ORTHO05D004735 2.6e-257 892.9 885 58.3
AUR62041305 Chenopodium quinoa HOM05D004020 ORTHO05D004735 5.7e-257 891.7 1039 51.0
Mapoly0001s0255 Marchantia polymorpha HOM05D004020 ORTHO05D004735 3.5e-230 802.7 1138 42.5
Pp3c16_8720 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.7e-224 782.7 1139 41.2
Pp3c5_16860 Physcomitrium patens HOM05D004020 ORTHO05D004735 3.2e-223 779.6 1138 42.2
SMO118G0476 Selaginella moellendorffii HOM05D004020 ORTHO05D004735 6.6e-221 771.9 1095 41.7
AagrBONN_evm.TU.Sc2ySwM_340.402 Anthoceros agrestis HOM05D004020 ORTHO05D004735 2.1e-219 766.9 1138 40.2
Ah.01g015940 Amaranthus hybridus HOM05D004020 ORTHO05D004735 1.5e-209 734.2 665 59.5
Oeu008367.3 Olea europaea HOM05D004020 ORTHO05D004735 5.8e-209 732.3 886 51.8
Lj2C1000T5 Lonicera japonica HOM05D004020 ORTHO05D004735 8.4e-200 701.8 797 52.7
Dinv12567 Davidia involucrata HOM05D004020 ORTHO05D004735 3.9e-197 693.0 985 46.1
AagrBONN_evm.TU.Sc2ySwM_117.107 Anthoceros agrestis HOM05D004020 ORTHO05D004735 5.3e-194 682.6 1054 39.1
Lj2A1002G14 Lonicera japonica HOM05D004020 ORTHO05D004735 1.4e-186 657.9 681 53.6
Gohir.A07G106066 Gossypium hirsutum HOM05D004020 ORTHO05D004735 6.9e-186 655.6 525 64.6
SalBow6G5048 Salvia bowleyana HOM05D004020 ORTHO05D004735 1.3e-171 608.2 523 62.0
Haze_23514 Corylus avellana HOM05D004020 ORTHO05D004735 4.1e-170 603.2 659 54.6
Gorai.001G118200 Gossypium raimondii HOM05D004020 ORTHO05D004735 1.7e-168 597.8 429 74.4
Gohir.A07G106132 Gossypium hirsutum HOM05D004020 ORTHO05D004735 5.0e-168 596.3 444 73.2
unitig_746.g26602 Utricularia gibba HOM05D004020 ORTHO05D004735 1.9e-151 541.2 534 54.9
Cpa.g.sc47.20 Carica papaya HOM05D004020 ORTHO05D004735 3.7e-131 473.8 468 59.4
Lj2A1002G13 Lonicera japonica HOM05D004020 ORTHO05D004735 1.1e-119 435.6 404 62.1
SEGI_08231 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 4.7e-110 403.7 658 41.2
HPP92_022569 Vanilla planifolia HOM05D004020 ORTHO05D004735 2.6e-108 397.9 339 63.1
Peaxi162Scf00150g00917 Petunia axillaris HOM05D004020 ORTHO05D004735 7.3e-103 379.8 227 78.9
CBR_g49688 Chara braunii HOM05D004020 ORTHO05D004735 9.9e-100 369.4 826 32.7
unitig_746.g26604 Utricularia gibba HOM05D004020 ORTHO05D004735 4.9e-99 367.1 360 57.2
CANSAT64G1975 Cannabis sativa HOM05D004020 ORTHO05D004735 7.3e-87 326.6 189 79.4
QL01p014670 Quercus lobata HOM05D004020 ORTHO05D004735 7.3e-87 326.6 351 49.6
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 8.7e-80 303.1 1082 25.4
Cpa.g.sc47.22 Carica papaya HOM05D004020 ORTHO05D004735 2.8e-78 298.1 230 72.2
Rhsim04G0218400 Rhododendron simsii HOM05D004020 ORTHO05D004735 7.6e-76 290.0 347 48.4
C06p19250 Brassica napus HOM05D004020 ORTHO05D004735 2.2e-75 288.5 244 65.2
C06p24240 Brassica napus HOM05D004020 ORTHO05D004735 8.7e-72 276.6 260 60.8
PRCOL_00006567 Prasinoderma coloniale HOM05D004020 ORTHO05D004735 5.8e-68 263.8 1231 23.1
AL580U10010 Arabidopsis lyrata HOM05D004020 ORTHO05D004735 5.5e-66 257.3 140 97.1
Haze_23513 Corylus avellana HOM05D004020 ORTHO05D004735 6.7e-64 250.4 193 67.9
SHI06178 Sapria himalayana HOM05D004020 ORTHO05D004735 8.7e-64 250.0 444 39.0
Hma1.2p1_1225F.1_g268540 Hydrangea macrophylla HOM05D004020 ORTHO05D004735 1.5e-63 249.2 140 83.6
HPP92_022573 Vanilla planifolia HOM05D004020 ORTHO05D004735 5.7e-63 247.3 145 81.4
arahy.Tifrunner.gnm1.ann1.FLM5Q5 Arachis hypogaea HOM05D004020 ORTHO05D004735 6.3e-62 243.8 198 59.6
Haze_23515 Corylus avellana HOM05D004020 ORTHO05D004735 1.5e-60 239.2 140 81.4
Pp3c25_5430 Physcomitrium patens HOM05D004020 ORTHO05D004735 5.9e-52 210.7 545 32.7
DCAR_031637 Daucus carota HOM05D004020 ORTHO05D004735 1.9e-50 205.7 123 79.7
Lj2C1000T6 Lonicera japonica HOM05D004020 ORTHO05D004735 2.1e-49 202.2 125 77.6
TAR633G2769 Trochodendron aralioides HOM05D004020 ORTHO05D004735 1.0e-48 199.9 121 80.2
FAN11G0203 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.2e-42 178.3 173 63.0
FAN21G0688 Fragaria x ananassa HOM05D004020 ORTHO05D004735 3.2e-42 178.3 173 63.0
Cre10.g443350 Chlamydomonas reinhardtii HOM05D004020 ORTHO05D004735 2.3e-40 172.2 1142 20.8
SHI06179 Sapria himalayana HOM05D004020 ORTHO05D004735 2.6e-39 168.7 123 65.9
Haze_23512 Corylus avellana HOM05D004020 ORTHO05D004735 2.2e-38 165.6 142 71.1
BcaC01g02437 Brassica carinata HOM05D004020 ORTHO05D004735 3.7e-38 164.9 153 59.5
C03p65310 Brassica napus HOM05D004020 ORTHO05D004735 1.1e-37 163.3 134 67.2
Cpa.g.sc47.18 Carica papaya HOM05D004020 ORTHO05D004735 2.9e-35 155.2 84 86.9
ClCG01G012880 Citrullus lanatus HOM05D004020 ORTHO05D004735 3.2e-34 151.8 82 86.6
CANSAT64G1073 Cannabis sativa HOM05D004020 ORTHO05D004735 4.2e-34 151.4 82 86.6
TAR476G0003 Trochodendron aralioides HOM05D004020 ORTHO05D004735 4.4e-31 141.4 134 65.7
Rhsim04G0145900 Rhododendron simsii HOM05D000045 ORTHO05D003665 7.5e-31 140.6 124 59.7
unitig_746.g26603 Utricularia gibba HOM05D004020 ORTHO05D004735 1.3e-30 139.8 166 48.2
MD01G1172900 Malus domestica HOM05D004020 ORTHO05D004735 8.2e-30 137.1 134 63.4
Nitab4.5_0027393g0010 Nicotiana tabacum HOM05D004020 ORTHO05D004735 5.9e-28 131.0 202 46.5
arahy.Tifrunner.gnm1.ann1.LCV131 Arachis hypogaea HOM05D004020 ORTHO05D004735 2.9e-27 128.6 117 55.6
SEGI_13700 Sequoiadendron giganteum HOM05D004020 ORTHO05D004735 3.8e-27 128.3 114 62.3
Nitab4.5_0005230g0050 Nicotiana tabacum HOM05D004020 ORTHO05D004735 5.7e-23 114.4 161 46.0
Zm00001eb064060 Zea mays HOM05D002996 ORTHO05D003536 2.0e-20 105.9 117 49.6
FAN16G3550 Fragaria x ananassa HOM05D004020 ORTHO05D004735 4.5e-20 104.8 90 67.8
SHI06176 Sapria himalayana HOM05D004020 ORTHO05D004735 6.5e-19 100.9 85 57.6
SHI06174 Sapria himalayana HOM05D004020 ORTHO05D004735 1.9e-18 99.4 95 55.8
HPP92_022568 Vanilla planifolia HOM05D004020 ORTHO05D004735 1.9e-18 99.4 107 52.3
Zm00001eb302500 Zea mays HOM05D004020 ORTHO05D004735 3.6e-17 95.1 128 52.3
Zm00001eb218380 Zea mays HOM05D002996 ORTHO05D003536 4.9e-14 84.7 87 46.0
Lsat_1_v5_gn_8_150800 Lactuca sativa HOM05D003321 ORTHO05D033839 1.3e-11 76.6 80 53.8
Nitab4.5_0011593g0020 Nicotiana tabacum HOM05D004020 ORTHO05D004735 9.8e-07 60.5 43 60.5
SHI06177 Sapria himalayana HOM05D004020 ORTHO05D004735 2.2e-06 59.3 40 67.5
SHI06173 Sapria himalayana HOM05D004020 ORTHO05D003975 3.7e-06 58.5 59 57.6


User provided reference genes

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