Gene: AT1G27540
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT1G27540
- Transcript Identifier AT1G27540.1
- Gene Type Coding gene
- Location Chr1 : 9566608-9567849 : negative
Gene Family Information
- ID HOM05D001487
- #Genes/#Species 427/11
- Phylogenetic origin
- ID ORTHO05D001365
- #Genes/#Species 423/11
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT1G27540.1
- uniprot Q9SXC7
Descriptions
- Description F-box protein (DUF295)
- Computational description Protein of unknown function (DUF295); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G27580.1); Has 275 Blast hits to 268 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 275; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0008150 | ND | Gene Ontology | biological_process | |
| GO:0009742 | ISO | PLAZA Tree-based Orthology | brassinosteroid mediated signaling pathway | AT3G03730 |
| GO:0006511 | ISO | PLAZA Tree-based Orthology | ubiquitin-dependent protein catabolic process | AT2G03560 |
| GO:1900459 | ISO | PLAZA Tree-based Orthology | positive regulation of brassinosteroid mediated signaling pathway | AT3G03730 |
| GO:0016567 | ISO | PLAZA Tree-based Orthology | protein ubiquitination | AT4G12810 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0003674 | ND | Gene Ontology | molecular_function | |
| GO:0061630 | ISO | PLAZA Tree-based Orthology | ubiquitin protein ligase activity | AT4G12810 |
| GO:0005515 | ISO | PLAZA Tree-based Orthology | protein binding | AT4G12820 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0009506 | ISO | PLAZA Tree-based Orthology | plasmodesma | AT4G14165 |
| GO:0005737 | ISO | PLAZA Tree-based Orthology | cytoplasm | AT4G12810 |
| GO:0019005 | ISO | PLAZA Tree-based Orthology | SCF ubiquitin ligase complex | AT4G12810 |
| GO:0005730 | ISO | PLAZA Tree-based Orthology | nucleolus | AT4G12810 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005174 | Domain unknown function DUF295 |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |