Gene: AT4G12820
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G12820
- Transcript Identifier AT4G12820.1
- Gene Type Coding gene
- Location Chr4 : 7527048-7528890 : negative
Gene Family Information
- ID HOM05D001487
- #Genes/#Species 427/11
- Phylogenetic origin
- ID ORTHO05D001365
- #Genes/#Species 423/11
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT4G12820.1
- uniprot Q9SU04
Descriptions
- Description F-box/kelch-repeat protein, putative (DUF295)
- Computational description CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT4G12810.1); Has 348 Blast hits to 337 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 348; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006511 | IDA ISS | Gene Ontology | ubiquitin-dependent protein catabolic process | 1 |
| GO:0009742 | IEA | GOA Database | brassinosteroid mediated signaling pathway | |
| GO:0009742 | IGI | Gene Ontology | brassinosteroid mediated signaling pathway | 1 |
| GO:1900459 | IMP | Gene Ontology | positive regulation of brassinosteroid mediated signaling pathway | 1 |
| GO:0016567 | ISO | PLAZA Integrative Orthology | protein ubiquitination | AT4G12810 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
| GO:0061630 | ISO | PLAZA Integrative Orthology | ubiquitin protein ligase activity | AT4G12810 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005730 | IEA | GOA Database | nucleolus | |
| GO:0005730 | ISS | Gene Ontology | nucleolus | |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | ISS | Gene Ontology | cytoplasm | |
| GO:0009506 | ISO | PLAZA Tree-based Orthology | plasmodesma | AT4G14165 |
| GO:0019005 | ISO | PLAZA Integrative Orthology | SCF ubiquitin ligase complex | AT4G12810 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| InterPro | Description |
|---|---|
| IPR005174 | Domain unknown function DUF295 |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |