Gene: AT4G12810
General Information
Structural Information
- Species Arabidopsis thaliana
- Gene Identifier AT4G12810
- Transcript Identifier AT4G12810.1
- Gene Type Coding gene
- Location Chr4 : 7522831-7523979 : negative
Gene Family Information
- ID HOM05D001487
- #Genes/#Species 427/11
- Phylogenetic origin
- ID ORTHO05D001365
- #Genes/#Species 423/11
- Phylogenetic origin
Gene Duplication Information
- Tandem Duplication Tandem duplicate
Labels
Identifiers
- tid AT4G12810.1
- uniprot Q9SU05
Descriptions
- Description F-box family protein
- Computational description F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: F-box family protein with a domain of unknown function (DUF295) (TAIR:AT4G12820.1); Has 332 Blast hits to 322 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 332; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0006511 | IDA | Gene Ontology | ubiquitin-dependent protein catabolic process | 1 |
| GO:0009742 | IEA | GOA Database | brassinosteroid mediated signaling pathway | |
| GO:0009742 | IGI | Gene Ontology | brassinosteroid mediated signaling pathway | 1 |
| GO:0016567 | IDA | Gene Ontology | protein ubiquitination | 1 |
| GO:1900459 | IMP | Gene Ontology | positive regulation of brassinosteroid mediated signaling pathway | 1 |
Molecular Function
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005515 | IPI | Gene Ontology | protein binding | 1 |
| GO:0005515 | IEA | InterPro | protein binding | |
| GO:0061630 | IDA | Gene Ontology | ubiquitin protein ligase activity | 1 |
Cellular Component
| GO term | Evidence(s) | Provider(s) | Description | Source(s) |
|---|---|---|---|---|
| GO:0005634 | IEA | GOA Database | nucleus | |
| GO:0005634 | ISM | Gene Ontology | nucleus | |
| GO:0005730 | IEA | GOA Database | nucleolus | |
| GO:0005730 | IDA | Gene Ontology | nucleolus | 1 |
| GO:0005737 | IEA | GOA Database | cytoplasm | |
| GO:0005737 | IDA | Gene Ontology | cytoplasm | 1 |
| GO:0019005 | IPI | Gene Ontology | SCF ubiquitin ligase complex | 1 |
| GO:0009506 | ISO | PLAZA Tree-based Orthology | plasmodesma | AT4G14165 |
Color Legend
| Experimental Evidence |
| Computational Reviewed Evidence |
| Electronic Evidence |
| Mapman id | Description |
|---|---|
| 35.1 | not assigned.annotated |