Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.7e-165 585.9 292 100.0
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 8.9e-162 573.5 292 96.9
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.0e-157 560.1 292 95.2
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 2.3e-157 558.9 292 95.5
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 1.9e-156 555.8 292 94.5
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 3.1e-154 548.5 289 93.4
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 6.9e-154 547.4 289 93.4
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 7.6e-153 543.9 289 92.7
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 9.9e-153 543.5 289 92.4
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 8.4e-152 540.4 289 91.7
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 1.1e-151 540.0 289 91.7
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 4.6e-150 534.6 289 89.6
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 1.0e-149 533.5 289 90.7
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 3.0e-149 531.9 288 88.9
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 5.1e-149 531.2 289 90.0
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.5e-148 528.9 287 88.9
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 3.3e-148 528.5 287 89.2
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 9.6e-148 526.9 287 88.5
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 1.3e-147 526.6 291 87.6
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 1.3e-147 526.6 290 87.9
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 2.8e-147 525.4 288 87.8
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 2.8e-147 525.4 290 87.6
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 3.6e-147 525.0 289 88.6
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 4.8e-147 524.6 290 87.9
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 4.8e-147 524.6 288 88.2
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 6.2e-147 524.2 290 88.3
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 6.2e-147 524.2 289 88.2
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 6.2e-147 524.2 286 87.4
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 8.1e-147 523.9 288 88.2
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 8.1e-147 523.9 288 88.2
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 1.1e-146 523.5 289 88.6
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 1.1e-146 523.5 286 88.1
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 1.4e-146 523.1 290 87.2
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 1.8e-146 522.7 290 89.7
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.8e-146 522.7 290 86.9
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 1.8e-146 522.7 292 86.3
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 3.1e-146 521.9 293 89.1
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 4.0e-146 521.5 291 85.6
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 4.0e-146 521.5 292 86.6
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 5.3e-146 521.2 290 87.2
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 6.9e-146 520.8 289 88.2
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 1.2e-145 520.0 286 87.1
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 1.2e-145 520.0 290 85.2
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 1.5e-145 519.6 290 87.6
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 2.0e-145 519.2 287 86.4
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 2.0e-145 519.2 290 85.5
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 2.0e-145 519.2 290 85.9
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.6e-145 518.8 290 87.2
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 2.6e-145 518.8 290 87.2
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 2.6e-145 518.8 290 86.2
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 2.6e-145 518.8 288 86.8
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 2.6e-145 518.8 287 88.5
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 3.4e-145 518.5 290 88.6
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 5.8e-145 517.7 289 87.2
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 5.8e-145 517.7 290 86.6
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 7.6e-145 517.3 286 87.1
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 7.6e-145 517.3 290 84.8
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 9.9e-145 516.9 290 86.2
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 1.3e-144 516.5 289 89.3
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 1.3e-144 516.5 290 86.2
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 2.2e-144 515.8 288 86.5
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 2.9e-144 515.4 289 88.9
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 2.9e-144 515.4 290 86.9
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 3.8e-144 515.0 289 88.6
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 3.8e-144 515.0 288 86.5
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 3.8e-144 515.0 290 86.9
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.8e-144 515.0 289 86.5
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 4.9e-144 514.6 289 87.5
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 4.9e-144 514.6 288 85.8
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 4.9e-144 514.6 290 86.6
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 6.4e-144 514.2 297 83.8
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 8.4e-144 513.8 288 86.5
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 8.4e-144 513.8 290 84.8
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 8.4e-144 513.8 290 86.2
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 2.4e-143 512.3 290 85.5
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 3.2e-143 511.9 288 85.4
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 4.2e-143 511.5 295 84.4
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 5.5e-143 511.1 289 86.9
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 5.5e-143 511.1 288 85.4
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 5.5e-143 511.1 290 84.8
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 7.1e-143 510.8 287 86.4
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 7.1e-143 510.8 292 84.9
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 7.1e-143 510.8 289 85.5
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 7.1e-143 510.8 289 85.5
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 9.3e-143 510.4 290 85.2
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 4.6e-142 508.1 294 87.1
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 4.6e-142 508.1 289 84.4
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 4.6e-142 508.1 311 80.4
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 1.3e-141 506.5 290 83.8
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.9e-140 502.7 286 85.0
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.9e-140 502.7 322 77.6
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 2.5e-140 502.3 271 91.1
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 5.6e-140 501.1 286 84.6
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 5.6e-140 501.1 287 83.3
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 5.6e-140 501.1 272 90.4
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 5.6e-140 501.1 275 88.0
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 7.4e-140 500.7 290 84.5
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 3.1e-138 495.4 273 87.5
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 6.9e-138 494.2 268 92.5
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 1.5e-137 493.0 274 88.3
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 2.6e-137 492.3 291 86.3
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 3.4e-137 491.9 270 89.3
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.0e-136 490.3 286 84.6
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 1.3e-136 490.0 271 86.3
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 1.3e-136 490.0 290 81.7
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 4.9e-136 488.0 271 86.7
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 4.9e-136 488.0 271 86.7
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 3.2e-135 485.3 285 83.5
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 5.5e-135 484.6 278 86.3
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 2.7e-134 482.3 271 88.9
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 4.6e-134 481.5 366 68.3
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 6.0e-134 481.1 273 86.8
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 7.9e-134 480.7 289 82.0
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 2.3e-133 479.2 282 84.8
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 5.7e-132 474.6 274 86.5
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.3e-131 473.4 270 85.2
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 2.1e-131 472.6 295 79.7
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 2.1e-131 472.6 295 79.7
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 3.7e-131 471.9 300 78.7
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 1.1e-130 470.3 315 75.9
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 1.3e-128 463.4 258 87.2
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.7e-128 463.0 290 79.7
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 8.4e-128 460.7 287 77.0
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 1.1e-127 460.3 258 88.0
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 9.3e-127 457.2 253 87.7
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.2e-126 456.8 253 87.7
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 2.3e-125 452.6 271 79.3
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 1.3e-123 446.8 325 70.5
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 4.8e-123 444.9 318 72.3
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 1.1e-122 443.7 238 90.3
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 1.8e-122 443.0 286 72.7
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.8e-122 443.0 254 85.8
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 1.8e-122 443.0 290 76.2
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 2.6e-121 439.1 245 86.1
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 7.2e-119 431.0 241 87.6
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 3.9e-117 425.2 288 74.7
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 5.5e-111 404.8 285 69.1
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 2.0e-108 396.4 274 74.5
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 2.0e-108 396.4 397 56.7
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.3e-107 393.7 220 85.5
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 5.5e-95 351.7 275 67.3
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 9.4e-95 350.9 190 85.3
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.2e-94 350.5 198 85.9
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 5.9e-89 331.6 173 91.9
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 4.7e-86 322.0 288 61.1
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 8.0e-86 321.2 267 64.8
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 4.9e-83 312.0 285 60.0
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-77 291.6 172 79.7
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 5.4e-74 282.0 246 62.6
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 4.4e-68 262.3 194 70.6
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 1.3e-67 260.8 261 49.0
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-49 200.3 131 76.3
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 2.1e-49 200.3 131 76.3
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 1.0e-48 198.0 189 59.3
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 4.9e-35 152.5 153 55.6
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 6.9e-29 132.1 129 58.1
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 8.7e-24 115.2 72 69.4
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.9e-23 114.0 99 60.6
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 5.6e-23 112.5 78 70.5
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 2.8e-22 110.2 88 65.9
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 2.8e-22 110.2 88 65.9
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 5.8e-20 102.4 64 78.1
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 1.3e-16 91.3 51 80.4
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 5.7e-15 85.9 46 89.1
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 1.5e-12 77.8 45 82.2
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 3.2e-10 70.1 90 50.0
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 3.2e-10 70.1 90 50.0
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.8e-08 64.3 39 82.1
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 2.8e-06 57.0 32 84.4
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 3.7e-06 56.6 41 61.0


User provided reference genes

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