Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|---|
Aethionema arabicum | Aa31LG1G12580 | LG-1 | + | View | |
Acer truncatum | Atru.BG.119.p | chr3 | - | View | |
Actinidia chinensis | Actinidia20454 | Lachesis_group15 | + | View | |
Actinidia chinensis | Actinidia03730 | Lachesis_group9 | - | View | |
Arabidopsis lyrata | AL8G37190 | scaffold_8 | + | View | |
Avicennia marina | MSTRG.17806 | ScioBoG_19834_HRSCAF_19925 | - | View | |
Avicennia marina | MSTRG.12319 | ScioBoG_17730_HRSCAF_17811 | - | View | |
Aquilegia oxysepala | Aqoxy1G01246 | CHR01 | - | View | |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.VBZF8N | K03526 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (gcpE, ispG) | arahy.Tifrunner.gnm1.Arahy.08 | + | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.X2DMBM | K03526 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (gcpE, ispG) | arahy.Tifrunner.gnm1.Arahy.03 | + | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.068WZH | PTHR30454//PTHR30454:SF0 - 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE // 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC | arahy.Tifrunner.gnm1.Arahy.13 | - | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.ETHX4E | PTHR30454//PTHR30454:SF0 - 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE // 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC | arahy.Tifrunner.gnm1.Arahy.18 | + | View |
Arabidopsis thaliana | AT5G60600 | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS)%2C catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2%2C4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light%2C the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however%2C the enzyme requires an electron shuttle: ferredoxin-NADP%3Csup%3E+%3C/sup%3E reductase. 4-hydroxy-3-methylbut-2-enyl diphosphate synthase (HDS)%3B FUNCTIONS IN: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity%2C 4 iron%2C 4 sulfur cluster binding%3B INVOLVED IN: response to light stimulus%2C isoprenoid biosynthetic process%2C isopentenyl diphosphate biosynthetic process%2C mevalonate-independent pathway%2C response to bacterium%2C systemic acquired resistance%2C salicylic acid mediated signaling pathway%3B LOCATED IN: chloroplast stroma%2C chloroplast%2C chloroplast envelope%3B EXPRESSED IN: 23 plant structures%3B EXPRESSED DURING: 13 growth stages%3B CONTAINS InterPro DOMAIN/s: Dihydropteroate synthase-like (InterPro:IPR011005)%2C 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C atypical (InterPro:IPR017178)%2C 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase%2C bacterial-type (InterPro:IPR004588)%3B Has 12699 Blast hits to 7350 proteins in 2074 species: Archae - 0%3B Bacteria - 8133%3B Metazoa - 2%3B Fungi - 2%3B Plants - 72%3B Viruses - 0%3B Other Eukaryotes - 4490 (source: NCBI BLink). | Chr5 | + | View |
Amborella trichopoda | ATR0115G030 | AmTr_v1.0_scaffold00175 | + | View | |
Brassica carinata | BcaC04g19719 | ChrC04 | + | View | |
Brassica carinata | BcaB08g36355 | ChrB08 | + | View | |
Brassica napus | A10p17790 | A10 | + | View | |
Brassica napus | C09p53300 | C09 | + | View | |
Brassica oleracea | BolC9t58204H | C9 | + | View | |
Brassica rapa | BraA10t43856Z | A10 | + | View | |
Beta vulgaris | EL10Ac9g22507 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Chr9_EL10_PGA_scaffold8 | + | View |
Camellia sinensis var. sinensis | CSS0023657 | hydroxymethylbutenyl diphosphate synthase [Camellia sinensis] | Chr13 | + | View |
Camellia sinensis var. sinensis | CSS0023686 | hydroxymethylbutenyl diphosphate synthase [Camellia sinensis] | Chr11 | - | View |
Capsicum annuum | CAN.G631.24 | PGAv.1.6.scaffold631 | + | View | |
Cannabis sativa | CANSAT54G2863 | NC_044375.1 | + | View | |
Cicer arietinum L. | Ca_01417_v3 | Ca_LG1_v3 | - | View | |
Corylus avellana | Haze_23837 | Similar to ISPG: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic (Arabidopsis thaliana OX%3D3702) | 6 | - | View |
Coffea canephora | Cc01_g11160 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic | chr1 | - | View |
Citrus clementina | Ciclev10027881m.g | scaffold_8 | - | View | |
Cardamine hirsuta | CARHR274260 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Chr8 | + | View |
Carya illinoinensis | CiPaw.14G080300 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Chr14 | + | View |
Carya illinoinensis | CiPaw.13G112600 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Chr13 | + | View |
Citrullus lanatus | ClCG03G002170 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | CG_Chr03 | - | View |
Cucumis melo | MELO3C005061.2 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | chr12 | - | View |
Carica papaya | Cpa.g.sc216.13 | supercontig_216 | - | View | |
Chenopodium quinoa | AUR62039630 | ISPG: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | C_Quinoa_Scaffold_3093 | + | View |
Chenopodium quinoa | AUR62024990 | ISPG: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | C_Quinoa_Scaffold_4082 | - | View |
Capsella rubella | Carub.0008s2128 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | scaffold_8 | + | View |
Cucumis sativus L. | CsaV3_1G012820 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | chr1 | - | View |
Daucus carota | DCAR_006060 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | DCARv2_Chr2 | + | View |
Daucus carota | DCAR_015537 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | DCARv2_Chr4 | + | View |
Davidia involucrata | Dinv32749 | GWHABJS00000010 | - | View | |
Durio zibethinus | Duzib168G1617 | NW_019168159.1 | - | View | |
Erigeron canadensis | ECA238G4788 | Conyza_canadensis_scaffold:6 | - | View | |
Eucalyptus grandis | Eucgr.B02495 | Chr02 | + | View | |
Eutrema salsugineum | Thhalv10012774m.g | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | scaffold_2 | - | View |
Fragaria x ananassa | FAN25G3839 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Fvb3-1 | + | View |
Fragaria x ananassa | FAN21G2260 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Fvb3-2 | - | View |
Fragaria x ananassa | FAN16G0818 | PTHR30454:SF0 - 4-HYDROXY-3-METHYLBUT-2-EN-1-YL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC | Fvb3-3 | - | View |
Fragaria x ananassa | FAN11G2723 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Fvb3-4 | + | View |
Fragaria vesca | FvH4_3g32460 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Fvb3 | - | View |
Gossypium hirsutum | Gohir.D08G214700 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | D08 | + | View |
Gossypium hirsutum | Gohir.A08G197500 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | A08 | + | View |
Glycine max | Glyma.12G173200 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Gm12 | - | View |
Glycine max | Glyma.13G326400 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Gm13 | - | View |
Gossypium raimondii | Gorai.004G228600 | Chr04 | + | View | |
Helianthus annuus | HanXRQChr14g0452871 | Probable 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic | HanXRQChr14 | - | View |
Hydrangea macrophylla | Hma1.2p1_1031F.1_g250040 | Hma1.2p1_1031F.1 | + | View | |
Lupinus albus | Lalb_Chr24g0394611 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Lalb_Chr24 | + | View |
Lupinus albus | Lalb_Chr03g0027311 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Lalb_Chr03 | + | View |
Lupinus albus | Lalb_Chr14g0374701 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Lalb_Chr14 | - | View |
Lotus japonicus | Lj3g0003128 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | chr3 | - | View |
Lonicera japonica | Lj2C1029G11 | GWHAAZE00000002 | - | View | |
Lactuca sativa | Lsat_1_v5_gn_2_98360 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Lsat_1_v8_lg_2 | - | View |
Magnolia biondii | MBI07_g19314_MAGBIO | AED:0.11 | Chr07 | - | View |
Malus domestica | MD11G1135000 | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | Chr11 | + | View |
Malus domestica | MD03G1117300 | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | Chr03 | + | View |
Manihot esculenta | Manes.11G144700 | Chromosome11 | + | View | |
Manihot esculenta | Manes.04G021700 | Chromosome04 | - | View | |
Medicago truncatula | Medtr2g094160 | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | chr2 | + | View |
Nelumbo nucifera | Nn2g10781 | chr2 | + | View | |
Nicotiana tabacum | Nitab4.5_0000650g0220 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, atypical, Aldolase-type TIM barrel | Nitab4.5_0000650 | + | View |
Olea europaea | Oeu059093.1 | chr20 | + | View | |
Olea europaea | Oeu002865.1 | chr11 | + | View | |
Petunia axillaris | Peaxi162Scf00270g00819 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Peaxi162Scf00270 | - | View |
Punica granatum | PGR102G1912 | NC_045129.1 | + | View | |
Prunus persica | Prupe.6G101000 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Pp06 | + | View |
Pisum sativum | Psat5g278240 | GcpE protein | chr5LG3 | + | View |
Papaver somniferum | PSO339G0771 | NC_039366.1 | - | View | |
Papaver somniferum | PSO384G0735 | NC_039368.1 | - | View | |
Populus trichocarpa | Potri.009G013400 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Chr09 | + | View |
Populus trichocarpa | Potri.004G210400 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Chr04 | - | View |
Phaseolus vulgaris | Phvul.005G135800 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | Chr05 | - | View |
Quercus lobata | QL01p022296 | 1 | - | View | |
Rosa chinensis | RcHm_v2.0_Chr5g0059471 | RcHm_v2.0_Chr5 | - | View | |
Rhododendron simsii | Rhsim01G0217200 | chr01 | - | View | |
Striga asiatica | SGA_v2.0_scaffold2G00894 | scaffold2 | - | View | |
Salvia bowleyana | SalBow3G4399 | GWHASIU00000006 | + | View | |
Salix brachista | Sabra09G0008100 | GWHAAZH00000009 | - | View | |
Salix brachista | Sabra04G0142000 | GWHAAZH00000004 | - | View | |
Simmondsia chinensis | Sc06g0010150 | GWHAASQ00000006 | + | View | |
Sechium edule | Sed0018088 | LG01 | + | View | |
Schrenkiella parvula | Sp6g22170 | 1.17.7.1 - (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase (ferredoxin) / 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase | ch6-6 | + | View |
Solanum pennellii | Sopen11g028100 | Encodes a chloroplast-localized hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) synthase (HDS), catalyzes the formation of HMBPP from 2-C-methyl-D-erythrytol 2,4-cyclodiphosphate (MEcPP). The HDS enzyme controls the penultimate steps of the biosynthesis of IPP and dimethylallyl diphosphate (DMAPP) via the MEP pathway and may serve as a metabolic control point for SA-mediated disease resistance. In the light, the electrons required for the reaction catalyzed by HDS are directly provided by the electron flow from photosynthesis via ferredoxin. In the dark however, the enzyme requires an electron shuttle: ferredoxin-NADP
Spenn-ch11 |
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Solanum tuberosum | PGSC0003DMG400008050 | GcpE | ST4.03ch11 | - | View |
Trochodendron aralioides | TAR633G1103 | group2 | - | View | |
Theobroma cacao | Thecc.09G340000 | 4-hydroxy-3-methylbut-2-enyl diphosphate synthase | Chromosome_9 | + | View |
Tarenaya hassleriana | THA.LOC104810855 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin)%2C chloroplastic | NW_010965304.1 | + | View |
Trifolium pratense | TPR.G11486 | Tp57577_TGAC_v2_LG7 | + | View | |
Tripterygium wilfordii | TWI31G1183 | NC_052233.1 | + | View | |
Tripterygium wilfordii | TWI79G1123 | NC_052238.1 | + | View | |
Vaccinium macrocarpon | vmacro14439 | Similar to ISPG: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin), chloroplastic (Arabidopsis thaliana OX%3D3702) | chr7_Vaccinium_macrocarpon_Stevens_v1 | - | View |
Vigna mungo | VMungo1080G1181 | CM024079.1 | + | View | |
Vitis vinifera | GSVIVG01025182001 | chr6 | - | View |