Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1468.8 741 100.0
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1463.0 741 99.5
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1433.3 741 97.8
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1408.7 741 95.0
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1404.8 741 94.7
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1388.6 741 93.9
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1340.1 739 89.9
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1334.7 741 88.9
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1327.8 740 88.8
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1327.0 740 88.8
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1326.2 742 89.1
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1326.2 741 88.5
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1323.9 741 88.0
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1323.1 741 88.5
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1322.4 741 88.0
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1322.0 741 88.3
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1321.6 741 88.7
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1321.2 741 88.3
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1320.1 741 88.4
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1320.1 741 88.0
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1320.1 741 88.3
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1319.7 741 88.0
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1318.9 741 88.3
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1318.5 741 89.2
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1317.0 747 87.8
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1316.2 741 88.0
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1315.8 741 88.1
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1315.4 741 87.4
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1313.5 741 87.6
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 743 87.6
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1312.0 741 87.0
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1311.2 741 87.4
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1310.4 740 88.2
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1310.4 744 88.3
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1310.0 741 87.3
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1309.3 741 88.0
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1308.9 741 86.9
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1308.9 741 87.6
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1306.6 740 88.0
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1306.6 741 88.0
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1305.8 741 87.0
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1304.7 741 87.7
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1304.7 741 86.8
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1303.9 741 87.3
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1303.5 743 87.2
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1303.5 740 87.2
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1303.1 741 87.4
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 743 87.1
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 744 87.1
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1302.0 743 86.9
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 741 87.4
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 735 87.5
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1298.9 742 87.2
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1297.7 741 86.2
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1297.3 743 87.2
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1296.6 741 86.9
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1295.0 741 86.5
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1293.9 743 87.3
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1293.5 768 84.1
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1292.7 763 85.8
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1292.7 763 85.8
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1292.3 741 86.8
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1292.3 740 86.5
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1290.8 741 86.1
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1290.4 742 86.5
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 741 85.8
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 743 85.7
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1287.7 742 86.4
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1286.9 739 86.2
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1285.4 745 85.6
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1283.5 740 85.9
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1283.1 741 85.3
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1280.8 740 85.8
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1279.6 742 85.4
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1279.6 744 85.1
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1278.8 743 85.6
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1278.5 744 84.9
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1277.7 741 85.4
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1275.8 741 85.2
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1275.4 740 84.3
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1275.4 742 85.0
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1271.9 741 85.0
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1270.4 740 85.0
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1269.6 741 85.0
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1268.8 744 84.7
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1266.5 740 84.1
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1263.1 741 83.9
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1260.4 740 83.8
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1260.4 740 83.5
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1259.6 740 83.4
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1259.6 741 83.7
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1258.8 707 88.1
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1258.4 740 83.4
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1258.0 740 83.2
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1256.1 803 79.5
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1256.1 822 78.5
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1254.6 740 83.2
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1253.8 741 83.9
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1253.4 743 83.7
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1251.9 737 83.6
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1251.9 741 84.2
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1250.7 720 86.4
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1248.4 711 87.3
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1247.6 741 82.9
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1247.3 747 82.6
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1246.9 707 87.6
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1246.1 740 83.1
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1246.1 757 82.3
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1243.4 710 86.8
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1235.7 741 84.3
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1229.9 745 82.1
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1224.5 773 79.6
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1220.7 747 81.7
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1213.4 736 83.8
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1209.1 739 81.5
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1194.1 746 81.9
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1188.3 668 88.3
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1184.9 748 79.0
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1171.4 674 86.2
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1136.3 738 77.2
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1118.6 631 87.3
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1112.4 616 88.6
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1110.1 687 79.8
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1102.4 741 73.8
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1087.0 740 72.8
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 8.5e-310 1066.6 701 75.2
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 4.9e-297 1024.2 635 79.5
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 1.1e-240 837.0 667 62.8
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.5e-237 826.6 539 80.7
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 3.5e-231 805.4 698 60.0
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 3.3e-221 772.3 741 59.2
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 4.8e-220 768.5 739 59.0
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 1.6e-215 753.4 644 62.0
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.2e-207 727.2 523 72.8
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 4.1e-203 712.2 453 80.6
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 1.2e-197 694.1 464 75.6
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 1.1e-134 485.0 433 62.4
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 4.9e-132 476.1 263 88.2
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 2.4e-102 377.5 218 87.2
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 6.1e-82 309.7 578 36.5
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 2.5e-75 287.7 152 90.1
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 2.0e-72 278.1 143 93.7
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.5e-59 235.3 171 73.1
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 9.9e-40 169.5 273 38.1
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 2.9e-39 167.9 84 92.9
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.5e-35 155.6 80 91.2
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 7.3e-35 153.3 98 74.5
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 6.0e-29 133.7 72 86.1
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 4.8e-26 124.0 71 84.5
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 9.9e-24 116.3 80 68.8
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 3.0e-20 104.8 108 54.6
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 8.7e-20 103.2 69 69.6
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 9.6e-19 99.8 69 69.6
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 1.6e-18 99.0 85 57.6
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 2.8e-18 98.2 72 72.2
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.4e-17 95.9 67 71.6
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.2e-16 92.8 67 68.7
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 2.0e-16 92.0 222 33.3
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 3.4e-16 91.3 85 54.1
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 7.6e-16 90.1 69 60.9
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 7.9e-13 80.1 71 67.6
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.8e-12 79.0 61 62.3
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 3.9e-12 77.8 47 78.7
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 2.8e-10 71.6 43 72.1
CAN.G970.17 Capsicum annuum HOM05D004298 ORTHO05D115446 3.7e-10 71.2 58 67.2
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 1.4e-09 69.3 41 80.5
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 3.4e-08 64.7 33 90.9
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 4.5e-08 64.3 52 51.9
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 3.8e-07 61.2 47 59.6
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.4e-06 59.3 46 58.7
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.9e-06 58.9 45 60.0
Sopen04g025080 Solanum pennellii HOM05D001730 ORTHO05D027964 3.2e-06 58.2 58 51.7
ATR0561G078 Amborella trichopoda HOM05D004298 ORTHO05D065354 9.3e-06 56.6 75 48.0


User provided reference genes

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