Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc06g074030.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (AHRD V3.3 *** A0A2U1M9A7_ARTAN) SL4.0ch06 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr3.3151 chr3 - View
Actinidia chinensis Actinidia07268 Lachesis_group13 + View
Actinidia chinensis Actinidia07934 Lachesis_group0 + View
Arabidopsis lyrata AL6G33240 scaffold_6 - View
Avicennia marina MSTRG.12381 ScioBoG_17730_HRSCAF_17811 + View
Avicennia marina MSTRG.17688 ScioBoG_19834_HRSCAF_19925 - View
Aquilegia oxysepala Aqoxy2G01017 CHR02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.R63LGU PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.12 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.5E2E13 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) arahy.Tifrunner.gnm1.Arahy.18 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.CSR0C2 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED arahy.Tifrunner.gnm1.Arahy.02 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.F8EV2B PTHR10797 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT arahy.Tifrunner.gnm1.Arahy.06 + View
Arabidopsis thaliana AT5G22250 Polynucleotidyl transferase, ribonuclease H-like superfamily protein Encodes one of the homologs of the yeast CCR4-associated factor 1: AT3G44260 (CAF1a)%2C AT5G22250 (CAF1b). Has mRNA deadenylation activity. Also plays a role in plant defense responses. Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein%3B FUNCTIONS IN: ribonuclease activity%2C nucleic acid binding%3B INVOLVED IN: RNA modification%3B LOCATED IN: nucleus%3B EXPRESSED IN: 21 plant structures%3B EXPRESSED DURING: 11 growth stages%3B CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941)%2C Polynucleotidyl transferase%2C ribonuclease H fold (InterPro:IPR012337)%3B BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase%2C ribonuclease H-like superfamily protein (TAIR:AT3G44260.1)%3B Has 907 Blast hits to 897 proteins in 225 species: Archae - 0%3B Bacteria - 0%3B Metazoa - 254%3B Fungi - 150%3B Plants - 381%3B Viruses - 0%3B Other Eukaryotes - 122 (source: NCBI BLink). Chr5 - View
Amborella trichopoda ATR0772G152 AmTr_v1.0_scaffold00030 + View
Brassica carinata BcaC01g06596 ChrC01 + View
Brassica carinata BcaB05g22742 ChrB05 + View
Brassica carinata BcaC04g19561 ChrC04 - View
Brassica carinata BcaB08g36445 ChrB08 + View
Brassica carinata BcaB01g04720 ChrB01 + View
Brassica napus A10p18550 A10 + View
Brassica napus A03p10640 A03 - View
Brassica napus A06p22090 A06 + View
Brassica napus C03p12250 C03 - View
Brassica napus C09p54400 C09 + View
Brassica napus BNapus_Darmor_BZH_scaffold_38p00790 BNapus_Darmor_BZH_scaffold_38 + View
Brassica oleracea BolC9t58309H C9 + View
Brassica oleracea BolC3t19200H C3 + View
Brassica oleracea BolC2t07144H C2 - View
Brassica oleracea BolC3t13698H C3 - View
Brassica rapa BraA10t43935Z A10 + View
Brassica rapa BraA03t10376Z A03 - View
Brassica rapa BraA02t05646Z A02 - View
Beta vulgaris EL10Ac7g16322 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Chr7_EL10_PGA_scaffold5 - View
Camellia sinensis var. sinensis CSS0008620 CCR4-NOT transcription complex family protein [Populus trichocarpa] Chr11 - View
Camellia sinensis var. sinensis CSS0028008 putative CCR4-associated factor 1-11-like protein [Morus notabilis] Chr13 + View
Camellia sinensis var. sinensis CSS0028318 PREDICTED: probable CCR4-associated factor 1 homolog 9 [Vitis vinifera] Chr13 - View
Cannabis sativa CANSAT54G2279 NC_044375.1 + View
Cannabis sativa CANSAT64G0411 NC_044379.1 + View
Cicer arietinum L. Ca_09038_v3 Ca_LG3_v3 + View
Corylus avellana Haze_23334 Similar to CAF1-9: Probable CCR4-associated factor 1 homolog 9 (Arabidopsis thaliana OX%3D3702) 6 - View
Corylus avellana Haze_19676 Similar to CAF1-11: Probable CCR4-associated factor 1 homolog 11 (Arabidopsis thaliana OX%3D3702) 10 + View
Coffea canephora Cc06_g06320 Probable CCR4-associated factor 1 homolog 9 chr6 + View
Coffea canephora Cc01_g08640 Probable CCR4-associated factor 1 homolog 11 chr1 - View
Citrus clementina Ciclev10012581m.g scaffold_6 - View
Citrus clementina Ciclev10028965m.g scaffold_8 - View
Ceratophyllum demersum CDE06G2282 4 - View
Carpinus fangiana Cfa016665 Cfa07 + View
Carpinus fangiana Cfa009973 Cfa04 - View
Cardamine hirsuta CARHR191310 CCR4-NOT transcription complex subunit 7 Chr6 + View
Cardamine hirsuta CARHR104630 CCR4-NOT transcription complex subunit 7 Chr3 + View
Carya illinoinensis CiPaw.09G018400 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Chr09 + View
Carya illinoinensis CiPaw.13G132100 PTHR10797//PTHR10797:SF3 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Chr13 - View
Citrullus lanatus ClCG02G022360 CCR4-NOT transcription complex family protein CG_Chr02 + View
Cucumis melo MELO3C014512.2 Ribonuclease CAF1 chr05 - View
Cucumis melo MELO3C025580.2 Ribonuclease CAF1 chr12 - View
Carica papaya Cpa.g.sc195.38 supercontig_195 - View
Chenopodium quinoa AUR62020248 CAF1-11: Probable CCR4-associated factor 1 homolog 11 C_Quinoa_Scaffold_2465 - View
Chenopodium quinoa AUR62001534 CAF1-11: Probable CCR4-associated factor 1 homolog 11 C_Quinoa_Scaffold_2716 + View
Capsella rubella Carub.0005s0997 PTHR10797//PTHR10797:SF0 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // POP2, ISOFORM D scaffold_5 + View
Capsella rubella Carub.0006s1998 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED scaffold_6 - View
Cucumis sativus L. CsaV3_1G015160 Ccr4-associated factor, putative chr1 - View
Cucumis sativus L. CsaV3_6G038490 Ccr4-associated factor, putative chr6 + View
Daucus carota DCAR_010318 hypothetical protein DCARv2_Chr3 - View
Daucus carota DCAR_013427 hypothetical protein DCARv2_Chr4 - View
Davidia involucrata Dinv21699 GWHABJS00000010 - View
Davidia involucrata Dinv31741 GWHABJS00000015 + View
Davidia involucrata Dinv17080 GWHABJS00000007 - View
Durio zibethinus Duzib106G0622 NW_019168492.1 - View
Durio zibethinus Duzib170G1115 NW_019167871.1 - View
Durio zibethinus Duzib093G0239 NW_019167937.1 - View
Durio zibethinus Duzib168G0468 NW_019168159.1 + View
Durio zibethinus Duzib128G0611 NW_019168481.1 - View
Eucalyptus grandis Eucgr.J00535 Chr10 + View
Erythranthe guttata Migut.D02401 scaffold_4 - View
Erythranthe guttata Migut.N02465 scaffold_14 - View
Erythranthe guttata Migut.J00680 scaffold_10 + View
Erythranthe guttata Migut.L01814 scaffold_12 - View
Eutrema salsugineum Thhalv10014297m.g PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED scaffold_2 - View
Fragaria x ananassa FAN11G1075 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Fvb3-4 + View
Fragaria x ananassa FAN25G0932 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Fvb3-1 + View
Fragaria x ananassa FAN02G2117 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Fvb6-4 + View
Fragaria x ananassa FAN16G1374 PTHR10797//PTHR10797:SF3 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Fvb3-3 + View
Fragaria x ananassa FAN05G2410 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Fvb6-3 + View
Fragaria x ananassa FAN21G2671 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Fvb3-2 + View
Fragaria x ananassa FAN05G1513 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Fvb6-3 + View
Fragaria x ananassa FAN14G3172 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Fvb6-1 - View
Fragaria vesca FvH4_3g25960 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Fvb3 + View
Fragaria vesca FvH4_6g19860 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Fvb6 + View
Gossypium hirsutum Gohir.A09G097600 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) A09 + View
Gossypium hirsutum Gohir.D07G115400 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED D07 + View
Gossypium hirsutum Gohir.D08G017100 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) D08 + View
Gossypium hirsutum Gohir.D09G097301 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) D09 + View
Gossypium hirsutum Gohir.A07G111801 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED A07 + View
Glycine max Glyma.11G180500 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Gm11 - View
Glycine max Glyma.12G093100 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Gm12 + View
Glycine max Glyma.19G197600 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Gm19 + View
Glycine max Glyma.13G314100 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Gm13 - View
Glycine max Glyma.12G187400 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Gm12 + View
Glycine max Glyma.03G200000 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Gm03 + View
Gossypium raimondii Gorai.007G366900 Chr07 - View
Gossypium raimondii Gorai.001G123600 Chr01 + View
Gossypium raimondii Gorai.006G114000 Chr06 + View
Gossypium raimondii Gorai.004G011500 Chr04 + View
Hydrangea macrophylla Hma1.2p1_0064F.1_g034880 Hma1.2p1_0064F.1 - View
Lupinus albus Lalb_Chr24g0393431 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Lalb_Chr24 - View
Lupinus albus Lalb_Chr03g0028311 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) Lalb_Chr03 + View
Lotus japonicus Lj1g0018246 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) chr1 - View
Lotus japonicus Lj3g0023041 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) chr3 + View
Lotus japonicus Lj3g0028214 K12581 - CCR4-NOT transcription complex subunit 7/8 (CNOT7_8, CAF1, POP2) chr3 + View
Lonicera japonica Lj1P260T12 GWHAAZE00000001 + View
Lonicera japonica Lj2P973T12 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_2_55000 Lsat_1_v8_lg_2 - View
Malus domestica MD03G1152000 Polynucleotidyl transferase Chr03 + View
Manihot esculenta Manes.08G030900 Chromosome08 + View
Manihot esculenta Manes.11G165000 Chromosome11 + View
Manihot esculenta Manes.09G049000 Chromosome09 - View
Nelumbo nucifera Nn2g14255 chr2 + View
Nelumbo nucifera Nn6g34770 chr6 - View
Nicotiana tabacum Nitab4.5_0001135g0060 Ribonuclease H-like domain, Ribonuclease CAF1 Nitab4.5_0001135 + View
Olea europaea Oeu051599.1 chr1 - View
Olea europaea Oeu031464.1 scaffold261 + View
Petunia axillaris Peaxi162Scf00224g00073 CCR4-NOT transcription complex subunit 7 Peaxi162Scf00224 + View
Punica granatum PGR102G0775 NC_045129.1 - View
Punica granatum PGR119G0422 NC_045132.1 - View
Punica granatum PGR004G2104 NC_045131.1 - View
Prunus persica Prupe.7G098700 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Pp07 - View
Prunus persica Prupe.6G139200 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Pp06 + View
Pisum sativum Psat5g259800 CAF1 family ribonuclease chr5LG3 + View
Papaver somniferum PSO801G0237 NW_020628818.1 + View
Papaver somniferum PSO384G4834 NC_039368.1 + View
Papaver somniferum PSO339G6172 NC_039366.1 + View
Populus trichocarpa Potri.016G073000 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Chr16 - View
Populus trichocarpa Potri.004G200400 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Chr04 + View
Populus trichocarpa Potri.006G205600 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Chr06 - View
Populus trichocarpa Potri.009G161500 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Chr09 + View
Phaseolus vulgaris Phvul.005G121100 PTHR10797:SF3 - CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED Chr05 - View
Phaseolus vulgaris Phvul.001G193900 PTHR10797//PTHR10797:SF10 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // SUBFAMILY NOT NAMED Chr01 + View
Phaseolus vulgaris Phvul.011G097400 Chr11 + View
Quercus lobata QL07p037555 7 - View
Quercus lobata QL01p011650 1 - View
Rosa chinensis RcHm_v2.0_Chr5g0047241 RcHm_v2.0_Chr5 + View
Rosa chinensis RcHm_v2.0_Chr3g0475261 RcHm_v2.0_Chr3 + View
Rhododendron simsii Rhsim03G0067400 chr03 - View
Rhododendron simsii Rhsim01G0202300 chr01 - View
Striga asiatica SGA_v2.0_scaffold177G39466 scaffold177 + View
Salvia bowleyana SalBow3G2643 GWHASIU00000006 - View
Salix brachista Sabra04G0135600 GWHAAZH00000004 + View
Salix brachista Sabra06G0158600 GWHAAZH00000006 - View
Salix brachista Sabra09G0126200 GWHAAZH00000009 + View
Salix brachista Sabra16G0075900 GWHAAZH00000016 - View
Simmondsia chinensis Sc21g0006910 GWHAASQ00000021 - View
Sechium edule Sed0027529 LG11 + View
Schrenkiella parvula Sp6g22990 PTHR10797//PTHR10797:SF3 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED ch6-6 + View
Schrenkiella parvula Sp5g17030 PTHR10797//PTHR10797:SF3 - CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT // CCR4-ASSOCIATED FACTOR 1 HOMOLOG 11-RELATED ch5-2 + View
Solanum pennellii Sopen06g030450 Polynucleotidyl transferase, ribonuclease H-like superfamily protein | FUNCTIONS IN: ribonuclease activity, nucleic acid binding | INVOLVED IN: response to biotic stimulus, response to wounding, RNA modification | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 , Polynucleotidyl transferase, ribonuclease H fold | BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein Spenn-ch06 - View
Solanum pennellii Sopen11g027490 Polynucleotidyl transferase, ribonuclease H-like superfamily protein | FUNCTIONS IN: ribonuclease activity, nucleic acid binding | INVOLVED IN: RNA modification | LOCATED IN: nucleus | EXPRESSED IN: 21 plant structures | EXPRESSED DURING: 11 growth stages | CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 , Polynucleotidyl transferase, ribonuclease H fold | BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein Spenn-ch11 + View
Solanum tuberosum PGSC0003DMG400019618 CCR4-associated factor ST4.03ch11 + View
Solanum tuberosum PGSC0003DMG400005899 CCR4-associated factor ST4.03ch06 - View
Trochodendron aralioides TAR633G2586 group2 + View
Trochodendron aralioides TAR369G0341 group18 + View
Trochodendron aralioides TAR623G0809 group7 - View
Trochodendron aralioides TAR636G2653 group1 + View
Theobroma cacao Thecc.09G276600 Polynucleotidyl transferase Chromosome_9 - View
Theobroma cacao Thecc.05G100400 Polynucleotidyl transferase Chromosome_5 + View
Tarenaya hassleriana THA.LOC104799560 probable CCR4-associated factor 1 homolog 11 NW_010968505.1 + View
Trifolium pratense TPR.G23360 Tp57577_TGAC_v2_LG6 - View
Tripterygium wilfordii TWI77G0192 NC_052236.1 - View
Tripterygium wilfordii TWI31G0817 NC_052233.1 - View
Tripterygium wilfordii TWI79G0942 NC_052238.1 + View
Tripterygium wilfordii TWI74G1257 NC_052234.1 + View
Vaccinium macrocarpon vmacro07459 Similar to CAF1-11: Probable CCR4-associated factor 1 homolog 11 (Arabidopsis thaliana OX%3D3702) chr2_Vaccinium_macrocarpon_Stevens_v1 + View
Vigna mungo VMungo1127G0540 CM024076.1 + View
Vigna mungo VMungo1383G3672 CM024070.1 + View
Vitis vinifera GSVIVG01036062001 chr6 + View