Gene: Sopen06g030450
General Information
Structural Information
- Species Solanum pennellii
- Gene Identifier Sopen06g030450
- Transcript Identifier Sopen06g030450.1
- Gene Type Coding gene
- Location Spenn-ch06 : 56537470-56538276 : negative
Gene Family Information
- ID HOM05D000479
- #Genes/#Species 1104/98
- Phylogenetic origin
- ID ORTHO05D001285
- #Genes/#Species 440/88
- Phylogenetic origin
Gene Duplication Information
- Block Duplication Block duplicate
Labels
Identifiers
- tid Sopen06g030450.1
Descriptions
- Description Polynucleotidyl transferase, ribonuclease H-like superfamily protein | FUNCTIONS IN: ribonuclease activity, nucleic acid binding | INVOLVED IN: response to biotic stimulus, response to wounding, RNA modification | LOCATED IN: nucleus | EXPRESSED IN: 22 plant structures | EXPRESSED DURING: 12 growth stages | CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 , Polynucleotidyl transferase, ribonuclease H fold | BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
- Loading (ortholog descriptions from ath)...
Functional Annotation
Biological Process
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0002213 | ISO | PLAZA Integrative Orthology | defense response to insect | AT3G44260 |
GO:0009611 | ISO | PLAZA Integrative Orthology | response to wounding | AT3G44260 |
GO:0042742 | ISO | PLAZA Integrative Orthology | defense response to bacterium | AT3G44260 |
GO:0000289 | ISO | PLAZA Integrative Orthology | nuclear-transcribed mRNA poly(A) tail shortening | AT3G44260 |
Molecular Function
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0003676 | IEA | InterPro | nucleic acid binding | |
GO:0004535 | IEA | InterPro | poly(A)-specific ribonuclease activity | |
GO:0008408 | ISO | PLAZA Integrative Orthology | 3'-5' exonuclease activity | AT3G44260 |
GO:0005515 | ISO | PLAZA Integrative Orthology | protein binding | AT3G44260 |
Cellular Component
GO term | Evidence(s) | Provider(s) | Description | Source(s) |
---|---|---|---|---|
GO:0030014 | IEA | InterPro | CCR4-NOT complex |
Color Legend
Experimental Evidence |
Computational Reviewed Evidence |
Electronic Evidence |
Mapman id | Description |
---|---|
16.4.2.1.2.2 | RNA processing.RNA surveillance.mRNA deadenylation-dependent decay.mRNA deadenylation.CCR4-NOT complex.deadenylase component CAF1 |