Paralogs (intra-species colinear regions)

No paralogous anchorpoints available

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Acer truncatum Atru.chr3.3525 chr3 + View
Actinidia chinensis Actinidia07183 Lachesis_group13 - View
Actinidia chinensis Actinidia24144 Lachesis_group24 - View
Avicennia marina MSTRG.17761 ScioBoG_19834_HRSCAF_19925 + View
Amaranthus hybridus Ah.01g003310 DNA ligase 1 (AtLIG1) (EC 6.5.1.1) (DNA ligase I) (Polydeoxyribonucleotide synthase 1) AmaHy_arrow1_Scaffold_1 - View
Aquilegia oxysepala Aqoxy1G01108 CHR01 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.Z70S0B K10747 - DNA ligase 1 (LIG1) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.E6T32I K10747 - DNA ligase 1 (LIG1) arahy.Tifrunner.gnm1.Arahy.13 + View
Beta vulgaris EL10Ac9g22613 K10747 - DNA ligase 1 (LIG1) Chr9_EL10_PGA_scaffold8 - View
Camellia sinensis var. sinensis CSS0030578 PREDICTED: DNA ligase 1-like [Nicotiana sylvestris] Chr11 + View
Camellia sinensis var. sinensis CSS0042491 PREDICTED: DNA ligase 1-like [Nicotiana sylvestris] Chr11 - View
Capsicum annuum CAN.G546.43 PGAv.1.6.scaffold546 - View
Cicer arietinum L. Ca_19318_v3 Ca_LG6_v3 - View
Corylus avellana Haze_23710 Similar to LIG1: DNA ligase 1 (Arabidopsis thaliana OX%3D3702) 6 - View
Coffea canephora Cc01_g10340 DNA ligase 1 chr1 + View
Citrus clementina Ciclev10027871m.g scaffold_8 + View
Carpinus fangiana Cfa010294 Cfa04 - View
Carya illinoinensis CiPaw.13G123200 PTHR10459//PTHR10459:SF10 - DNA LIGASE // DNA LIGASE 1 Chr13 + View
Citrullus lanatus ClCG02G021550 DNA ligase CG_Chr02 - View
Cucumis melo MELO3C026949.2 DNA ligase chr11 - View
Carica papaya Cpa.g.sc1.8 supercontig_1 + View
Chenopodium quinoa AUR62029176 LIG1: DNA ligase 1 C_Quinoa_Scaffold_1846 + View
Chenopodium quinoa AUR62014959 LIG1: DNA ligase 1 C_Quinoa_Scaffold_2888 - View
Cucumis sativus L. CsaV3_6G014300 DNA ligase chr6 - View
Daucus carota DCAR_018768 hypothetical protein DCARv2_Chr5 + View
Davidia involucrata Dinv16217 GWHABJS00000010 + View
Davidia involucrata Dinv29375 GWHABJS00000007 + View
Durio zibethinus Duzib150G0588 NW_019167882.1 + View
Erigeron canadensis ECA248G1944 Conyza_canadensis_scaffold:9 - View
Eucalyptus grandis Eucgr.J00386 Chr10 - View
Erythranthe guttata Migut.N02546 scaffold_14 + View
Fragaria x ananassa FAN16G0005 PTHR10459//PTHR10459:SF10 - DNA LIGASE // DNA LIGASE 1 Fvb3-3 + View
Fragaria x ananassa FAN25G1126 PF01068//PF04675 - ATP dependent DNA ligase domain (DNA_ligase_A_M) // DNA ligase N terminus (DNA_ligase_A_N) Fvb3-1 - View
Fragaria x ananassa FAN21G1990 K10747 - DNA ligase 1 (LIG1) Fvb3-2 - View
Fragaria x ananassa FAN11G3348 PTHR10459:SF10 - DNA LIGASE 1 Fvb3-4 - View
Fragaria vesca FvH4_3g30730 K10747 - DNA ligase 1 (LIG1) Fvb3 + View
Gossypium hirsutum Gohir.A03G029300 K10747 - DNA ligase 1 (LIG1) A03 + View
Gossypium hirsutum Gohir.D03G139300 K10747 - DNA ligase 1 (LIG1) D03 - View
Gossypium hirsutum Gohir.D08G218132 PTHR10459:SF10 - DNA LIGASE 1 D08 - View
Glycine max Glyma.11G193100 PF01068//PF04675 - ATP dependent DNA ligase domain (DNA_ligase_A_M) // DNA ligase N terminus (DNA_ligase_A_N) Gm11 + View
Glycine max Glyma.12G080900 K10747 - DNA ligase 1 (LIG1) Gm12 - View
Gossypium raimondii Gorai.003G146000 Chr03 - View
Lupinus albus Lalb_Chr03g0027691 6.5.1.1 - DNA ligase (ATP) / Sealase Lalb_Chr03 - View
Lupinus albus Lalb_Chr19g0136941 PTHR10459//PTHR10459:SF10 - DNA LIGASE // DNA LIGASE 1 Lalb_Chr19 + View
Lotus japonicus Lj3g0025418 PTHR10459//PTHR10459:SF10 - DNA LIGASE // DNA LIGASE 1 chr3 - View
Lonicera japonica Lj2A1009G37 GWHAAZE00000002 - View
Lactuca sativa Lsat_1_v5_gn_1_64561 Lsat_1_v8_lg_1 + View
Malus domestica MD03G1127000 DNA ligase 1 Chr03 - View
Malus domestica MD11G1147600 DNA ligase 1 Chr11 - View
Manihot esculenta Manes.11G152000 Chromosome11 - View
Medicago truncatula Medtr4g057340 DNA ligase I, ATP-dependent protein chr4 + View
Nelumbo nucifera Nn6g35237 chr6 + View
Nicotiana tabacum Nitab4.5_0000329g0030 DNA ligase, ATP-dependent, central, DNA ligase, ATP-dependent, N-terminal, DNA ligase, ATP-dependent, DNA ligase, ATP-dependent, conserved site Nitab4.5_0000329 + View
Punica granatum PGR119G0273 NC_045132.1 + View
Prunus persica Prupe.6G112300 PTHR10459:SF10 - DNA LIGASE 1 Pp06 - View
Papaver somniferum PSO339G0390 NC_039366.1 - View
Populus trichocarpa Potri.009G005900 PTHR10459:SF10 - DNA LIGASE 1 Chr09 + View
Phaseolus vulgaris Phvul.011G085900 Chr11 - View
Quercus lobata QL01p015243 1 + View
Rosa chinensis RcHm_v2.0_Chr5g0056931 RcHm_v2.0_Chr5 + View
Rhododendron simsii Rhsim13G0100300 chr13 - View
Salvia bowleyana SalBow3G0225 GWHASIU00000006 + View
Salix brachista Sabra09G0003200 GWHAAZH00000009 + View
Sapria himalayana SHI06224 scaffold2_22354274 + View
Solanum pennellii Sopen11g026120 Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5 untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus. | DNA ligase 1 (LIG1) | FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding | INVOLVED IN: DNA repair, DNA replication, DNA recombination | LOCATED IN: mitochondrion, nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , DNA ligase, N-terminal , ATP dependent DNA ligase, central , ATP dependent DNA ligase, C-terminal , ATP-dependent DNA ligase , ATP-dependent DNA ligase, conserved site | BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase Spenn-ch11 - View
Solanum tuberosum PGSC0003DMG400000453 DNA ligase ST4.03ch11 - View
Trochodendron aralioides TAR636G2490 group1 - View
Theobroma cacao Thecc.09G350700 DNA ligase 1 Chromosome_9 - View
Trifolium pratense TPR.G36755 Tp57577_TGAC_v2_LG4 + View
Tripterygium wilfordii TWI75G1147 NC_052253.1 - View
Vaccinium macrocarpon vmacro03256 Similar to LIG1: DNA ligase 1 (Arabidopsis thaliana OX%3D3702) chr9_Vaccinium_macrocarpon_Stevens_v1 - View
Vigna mungo VMungo1127G0172 CM024076.1 - View
Vitis vinifera GSVIVG01031470001 chr6 - View