Paralogs (intra-species colinear regions)
No paralogous anchorpoints available
Orthologs (inter-species colinear regions)
Organism | Gene id | Description | Chromosome | Strand | Multiplicon |
---|---|---|---|---|---|
Acer truncatum | Atru.chr3.3525 | chr3 | + | View | |
Actinidia chinensis | Actinidia07183 | Lachesis_group13 | - | View | |
Actinidia chinensis | Actinidia24144 | Lachesis_group24 | - | View | |
Avicennia marina | MSTRG.17761 | ScioBoG_19834_HRSCAF_19925 | + | View | |
Amaranthus hybridus | Ah.01g003310 | DNA ligase 1 (AtLIG1) (EC 6.5.1.1) (DNA ligase I) (Polydeoxyribonucleotide synthase 1) | AmaHy_arrow1_Scaffold_1 | - | View |
Aquilegia oxysepala | Aqoxy1G01108 | CHR01 | + | View | |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.Z70S0B | K10747 - DNA ligase 1 (LIG1) | arahy.Tifrunner.gnm1.Arahy.03 | + | View |
Arachis hypogaea | arahy.Tifrunner.gnm1.ann1.E6T32I | K10747 - DNA ligase 1 (LIG1) | arahy.Tifrunner.gnm1.Arahy.13 | + | View |
Beta vulgaris | EL10Ac9g22613 | K10747 - DNA ligase 1 (LIG1) | Chr9_EL10_PGA_scaffold8 | - | View |
Camellia sinensis var. sinensis | CSS0030578 | PREDICTED: DNA ligase 1-like [Nicotiana sylvestris] | Chr11 | + | View |
Camellia sinensis var. sinensis | CSS0042491 | PREDICTED: DNA ligase 1-like [Nicotiana sylvestris] | Chr11 | - | View |
Capsicum annuum | CAN.G546.43 | PGAv.1.6.scaffold546 | - | View | |
Cicer arietinum L. | Ca_19318_v3 | Ca_LG6_v3 | - | View | |
Corylus avellana | Haze_23710 | Similar to LIG1: DNA ligase 1 (Arabidopsis thaliana OX%3D3702) | 6 | - | View |
Coffea canephora | Cc01_g10340 | DNA ligase 1 | chr1 | + | View |
Citrus clementina | Ciclev10027871m.g | scaffold_8 | + | View | |
Carpinus fangiana | Cfa010294 | Cfa04 | - | View | |
Carya illinoinensis | CiPaw.13G123200 | PTHR10459//PTHR10459:SF10 - DNA LIGASE // DNA LIGASE 1 | Chr13 | + | View |
Citrullus lanatus | ClCG02G021550 | DNA ligase | CG_Chr02 | - | View |
Cucumis melo | MELO3C026949.2 | DNA ligase | chr11 | - | View |
Carica papaya | Cpa.g.sc1.8 | supercontig_1 | + | View | |
Chenopodium quinoa | AUR62029176 | LIG1: DNA ligase 1 | C_Quinoa_Scaffold_1846 | + | View |
Chenopodium quinoa | AUR62014959 | LIG1: DNA ligase 1 | C_Quinoa_Scaffold_2888 | - | View |
Cucumis sativus L. | CsaV3_6G014300 | DNA ligase | chr6 | - | View |
Daucus carota | DCAR_018768 | hypothetical protein | DCARv2_Chr5 | + | View |
Davidia involucrata | Dinv16217 | GWHABJS00000010 | + | View | |
Davidia involucrata | Dinv29375 | GWHABJS00000007 | + | View | |
Durio zibethinus | Duzib150G0588 | NW_019167882.1 | + | View | |
Erigeron canadensis | ECA248G1944 | Conyza_canadensis_scaffold:9 | - | View | |
Eucalyptus grandis | Eucgr.J00386 | Chr10 | - | View | |
Erythranthe guttata | Migut.N02546 | scaffold_14 | + | View | |
Fragaria x ananassa | FAN16G0005 | PTHR10459//PTHR10459:SF10 - DNA LIGASE // DNA LIGASE 1 | Fvb3-3 | + | View |
Fragaria x ananassa | FAN25G1126 | PF01068//PF04675 - ATP dependent DNA ligase domain (DNA_ligase_A_M) // DNA ligase N terminus (DNA_ligase_A_N) | Fvb3-1 | - | View |
Fragaria x ananassa | FAN21G1990 | K10747 - DNA ligase 1 (LIG1) | Fvb3-2 | - | View |
Fragaria x ananassa | FAN11G3348 | PTHR10459:SF10 - DNA LIGASE 1 | Fvb3-4 | - | View |
Fragaria vesca | FvH4_3g30730 | K10747 - DNA ligase 1 (LIG1) | Fvb3 | + | View |
Gossypium hirsutum | Gohir.A03G029300 | K10747 - DNA ligase 1 (LIG1) | A03 | + | View |
Gossypium hirsutum | Gohir.D03G139300 | K10747 - DNA ligase 1 (LIG1) | D03 | - | View |
Gossypium hirsutum | Gohir.D08G218132 | PTHR10459:SF10 - DNA LIGASE 1 | D08 | - | View |
Glycine max | Glyma.11G193100 | PF01068//PF04675 - ATP dependent DNA ligase domain (DNA_ligase_A_M) // DNA ligase N terminus (DNA_ligase_A_N) | Gm11 | + | View |
Glycine max | Glyma.12G080900 | K10747 - DNA ligase 1 (LIG1) | Gm12 | - | View |
Gossypium raimondii | Gorai.003G146000 | Chr03 | - | View | |
Lupinus albus | Lalb_Chr03g0027691 | 6.5.1.1 - DNA ligase (ATP) / Sealase | Lalb_Chr03 | - | View |
Lupinus albus | Lalb_Chr19g0136941 | PTHR10459//PTHR10459:SF10 - DNA LIGASE // DNA LIGASE 1 | Lalb_Chr19 | + | View |
Lotus japonicus | Lj3g0025418 | PTHR10459//PTHR10459:SF10 - DNA LIGASE // DNA LIGASE 1 | chr3 | - | View |
Lonicera japonica | Lj2A1009G37 | GWHAAZE00000002 | - | View | |
Lactuca sativa | Lsat_1_v5_gn_1_64561 | Lsat_1_v8_lg_1 | + | View | |
Malus domestica | MD03G1127000 | DNA ligase 1 | Chr03 | - | View |
Malus domestica | MD11G1147600 | DNA ligase 1 | Chr11 | - | View |
Manihot esculenta | Manes.11G152000 | Chromosome11 | - | View | |
Medicago truncatula | Medtr4g057340 | DNA ligase I, ATP-dependent protein | chr4 | + | View |
Nelumbo nucifera | Nn6g35237 | chr6 | + | View | |
Nicotiana tabacum | Nitab4.5_0000329g0030 | DNA ligase, ATP-dependent, central, DNA ligase, ATP-dependent, N-terminal, DNA ligase, ATP-dependent, DNA ligase, ATP-dependent, conserved site | Nitab4.5_0000329 | + | View |
Punica granatum | PGR119G0273 | NC_045132.1 | + | View | |
Prunus persica | Prupe.6G112300 | PTHR10459:SF10 - DNA LIGASE 1 | Pp06 | - | View |
Papaver somniferum | PSO339G0390 | NC_039366.1 | - | View | |
Populus trichocarpa | Potri.009G005900 | PTHR10459:SF10 - DNA LIGASE 1 | Chr09 | + | View |
Phaseolus vulgaris | Phvul.011G085900 | Chr11 | - | View | |
Quercus lobata | QL01p015243 | 1 | + | View | |
Rosa chinensis | RcHm_v2.0_Chr5g0056931 | RcHm_v2.0_Chr5 | + | View | |
Rhododendron simsii | Rhsim13G0100300 | chr13 | - | View | |
Salvia bowleyana | SalBow3G0225 | GWHASIU00000006 | + | View | |
Salix brachista | Sabra09G0003200 | GWHAAZH00000009 | + | View | |
Sapria himalayana | SHI06224 | scaffold2_22354274 | + | View | |
Solanum pennellii | Sopen11g026120 | Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5 untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus. | DNA ligase 1 (LIG1) | FUNCTIONS IN: DNA binding, DNA ligase (ATP) activity, ATP binding | INVOLVED IN: DNA repair, DNA replication, DNA recombination | LOCATED IN: mitochondrion, nucleus | EXPRESSED IN: 24 plant structures | EXPRESSED DURING: 14 growth stages | CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold , DNA ligase, N-terminal , ATP dependent DNA ligase, central , ATP dependent DNA ligase, C-terminal , ATP-dependent DNA ligase , ATP-dependent DNA ligase, conserved site | BEST Arabidopsis thaliana protein match is: ATP-dependent DNA ligase | Spenn-ch11 | - | View |
Solanum tuberosum | PGSC0003DMG400000453 | DNA ligase | ST4.03ch11 | - | View |
Trochodendron aralioides | TAR636G2490 | group1 | - | View | |
Theobroma cacao | Thecc.09G350700 | DNA ligase 1 | Chromosome_9 | - | View |
Trifolium pratense | TPR.G36755 | Tp57577_TGAC_v2_LG4 | + | View | |
Tripterygium wilfordii | TWI75G1147 | NC_052253.1 | - | View | |
Vaccinium macrocarpon | vmacro03256 | Similar to LIG1: DNA ligase 1 (Arabidopsis thaliana OX%3D3702) | chr9_Vaccinium_macrocarpon_Stevens_v1 | - | View |
Vigna mungo | VMungo1127G0172 | CM024076.1 | - | View | |
Vitis vinifera | GSVIVG01031470001 | chr6 | - | View |