Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Solyc11g028020.3 Tomato AGAMOUS like 11 SL4.0ch11 - View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG9G12040 LG-9 + View
Aethionema arabicum Aa31LG4G9000 LG-4 + View
Arabidopsis lyrata AL6G43650 scaffold_6 - View
Avicennia marina MSTRG.1573 ScioBoG_102833_HRSCAF_103052 - View
Arabidopsis thaliana AT4G09960 K-box region and MADS-box transcription factor family protein Encodes a MADS box transcription factor expressed in the carpel and ovules. Plays a maternal role in fertilization and seed development. SEEDSTICK (STK)%3B FUNCTIONS IN: protein binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C ovule development%2C carpel development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%2C Transcription factor%2C K-box (InterPro:IPR002487)%3B BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT2G42830.1)%3B Has 7129 Blast hits to 7128 proteins in 907 species: Archae - 0%3B Bacteria - 6%3B Metazoa - 637%3B Fungi - 309%3B Plants - 6073%3B Viruses - 0%3B Other Eukaryotes - 104 (source: NCBI BLink). SEEDSTICK (STK)%3B FUNCTIONS IN: protein binding%2C sequence-specific DNA binding transcription factor activity%3B INVOLVED IN: regulation of transcription%2C DNA-dependent%2C ovule development%2C carpel development%3B LOCATED IN: nucleus%3B EXPRESSED IN: 11 plant structures%3B EXPRESSED DURING: 4 anthesis%2C C globular stage%2C petal differentiation and expansion stage%2C E expanded cotyledon stage%3B CONTAINS InterPro DOMAIN/s: Transcription factor%2C MADS-box (InterPro:IPR002100)%2C Transcription factor%2C K-box (InterPro:IPR002487)%3B BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT2G42830.2). Chr4 - View
Brassica carinata BcaC04g20998 ChrC04 - View
Brassica carinata BcaC03g15342 ChrC03 + View
Brassica napus C02p29480 C02 + View
Brassica napus A07p37820 A07 - View
Brassica napus C09p36760 C09 + View
Brassica napus C06p45700 C06 - View
Brassica oleracea BolC2t08939H C2 + View
Brassica oleracea BolC9t56508H C9 + View
Brassica rapa BraA07t31346Z A07 - View
Camellia sinensis var. sinensis CSS0037577 fbp11 [Petunia x hybrida] Chr9 + View
Corylus avellana Haze_13916 Similar to AGL12: Agamous-like MADS-box protein AGL12 (Arabidopsis thaliana OX%3D3702) 5 - View
Coffea canephora Cc10_g09390 Agamous-like MADS-box protein AGL11 chr10 + View
Carpinus fangiana Cfa008118 Cfa03 - View
Cardamine hirsuta CARHR260930 Agamous MADS-box transcription factor Chr8 - View
Carya illinoinensis CiPaw.03G017700 PTHR11945//PTHR11945:SF152 - MADS BOX PROTEIN // AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 Chr03 - View
Capsella rubella Carub.0006s2850 scaffold_6 - View
Cucumis sativus L. CsaV3_5G040310 MADS-box transcription factor chr5 + View
Durio zibethinus Duzib211G0198 NW_019168049.1 - View
Eucalyptus grandis Eucgr.F02956 Chr06 + View
Erythranthe guttata Migut.C01334 scaffold_3 - View
Eutrema salsugineum Thhalv10028938m.g PTHR11945:SF170 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 scaffold_3 + View
Eutrema salsugineum Thhalv10019132m.g PTHR11945:SF152 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 scaffold_9 + View
Gossypium hirsutum Gohir.D05G274700 PTHR11945//PTHR11945:SF238 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED D05 + View
Gossypium hirsutum Gohir.A05G272500 PTHR11945//PTHR11945:SF238 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED A05 + View
Gossypium hirsutum Gohir.A13G117800 PTHR11945:SF152 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 A13 + View
Gossypium hirsutum Gohir.D13G121000 PTHR11945:SF152 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 D13 + View
Gossypium raimondii Gorai.009G288000 Chr09 + View
Lotus japonicus Lj3g0022834 PTHR11945//PTHR11945:SF238 - MADS BOX PROTEIN // SUBFAMILY NOT NAMED chr3 - View
Magnolia biondii MBI03_g14521_MAGBIO AED:0.06 Chr03 - View
Malus domestica MD08G1216000 AGAMOUS-like 12 Chr08 - View
Malus domestica MD15G1400400 AGAMOUS-like 12 Chr15 - View
Petunia axillaris Peaxi162Scf00269g01618 MADS-box transcription factor 3 Peaxi162Scf00269 - View
Petunia axillaris Peaxi162Scf00688g00218 MADS-box transcription factor 26 Peaxi162Scf00688 + View
Prunus persica Prupe.1G548000 PTHR11945:SF152 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 Pp01 - View
Populus trichocarpa Potri.019G076800 PTHR11945:SF152 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 Chr19 - View
Populus trichocarpa Potri.013G102600 PTHR11945:SF152 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL12 Chr13 - View
Quercus lobata QL09p004420 9 - View
Rhododendron simsii Rhsim12G0003300 chr12 - View
Striga asiatica SGA_v2.0_scaffold118G32570 scaffold118 - View
Striga asiatica SGA_v2.0_scaffold24G10612 scaffold24 - View
Salvia bowleyana SalBow6G2599 GWHASIU00000002 + View
Salix brachista Sabra19G0088100 GWHAAZH00000019 - View
Salix brachista Sabra13G0088700 GWHAAZH00000013 - View
Schrenkiella parvula Sp6g07530 PTHR11945:SF170 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL11 ch6-2 + View
Solanum pennellii Sopen06g023350 a MADS box transcription factor expressed in the carpel and ovules | SEEDSTICK (STK) | FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity | INVOLVED IN: regulation of transcription, DNA-dependent, ovule development, carpel development | LOCATED IN: nucleus | EXPRESSED IN: 11 plant structures | EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage | CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box , Transcription factor, K-box | BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein ., Floral homeotic protein AGAMOUS (GAG2) - Panax ginseng (Korean ginseng) Spenn-ch06 + View
Solanum tuberosum PGSC0003DMG400005176 Fbp11 protein ST4.03ch06 - View
Tripterygium wilfordii TWI59G0399 NC_052248.1 + View
Vitis vinifera GSVIVG01025945001 chr18 - View