Paralogs (intra-species colinear regions)

Gene id Description Chromosome Strand Multiplicon
Sed0007844 LG14 + View

Orthologs (inter-species colinear regions)

Organism Gene id Description Chromosome Strand Multiplicon
Aethionema arabicum Aa31LG6G3650 LG-6 + View
Acer truncatum Atru.chr10.1942 chr10 - View
Actinidia chinensis Actinidia01897 Lachesis_group0 + View
Actinidia chinensis Actinidia05613 Lachesis_group20 + View
Arabidopsis lyrata AL7G32300 scaffold_7 - View
Avicennia marina MSTRG.7306 ScioBoG_102840_HRSCAF_103099 - View
Avicennia marina MSTRG.14683 ScioBoG_18782_HRSCAF_18867 - View
Amaranthus hybridus Ah.14g089300 RNA polymerase II C-terminal domain phosphatase-like 1 (FCP-like 1) (EC 3.1.3.16) (Carboxyl-terminal phosphatase-like 1) (AtCPL1) (CTD phosphatase-like 1) (Protein FIERY 2) (Protein JASMONATE OVEREXPRESSING 1) (Protein SHINY 4) AmaHy_arrow1_Scaffold_14 + View
Aquilegia oxysepala Aqoxy1G02556 CHR01 - View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.55XWXX K18998 - RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] (CPL1_2) arahy.Tifrunner.gnm1.Arahy.03 + View
Arachis hypogaea arahy.Tifrunner.gnm1.ann1.9SSZ5T K18998 - RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] (CPL1_2) arahy.Tifrunner.gnm1.Arahy.13 + View
Arabidopsis thaliana AT4G21670 C-terminal domain phosphatase-like 1 encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA%2C cold%2C and NaCl. C-terminal domain phosphatase-like 1 (CPL1)%3B FUNCTIONS IN: double-stranded RNA binding%2C phosphatase activity%2C nucleotide phosphatase activity%3B INVOLVED IN: abscisic acid mediated signaling pathway%2C negative regulation of transcription%2C response to abiotic stimulus%3B LOCATED IN: intracellular%3B CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding (InterPro:IPR001159)%2C NLI interacting factor (InterPro:IPR004274)%3B BEST Arabidopsis thaliana protein match is: carboxyl-terminal domain (ctd) phosphatase-like 2 (TAIR:AT5G01270.2)%3B Has 330 Blast hits to 317 proteins in 105 species: Archae - 0%3B Bacteria - 31%3B Metazoa - 57%3B Fungi - 81%3B Plants - 112%3B Viruses - 1%3B Other Eukaryotes - 48 (source: NCBI BLink). Chr4 + View
Brassica carinata BcaNung02771 Contig959 - View
Brassica carinata BcaNung00845 Contig365 - View
Brassica carinata BcaC06g30671 ChrC06 + View
Brassica napus A01p12960 A01 + View
Brassica napus C03p83130 C03 - View
Brassica oleracea BolC7t45630H C7 + View
Brassica oleracea BolC3t20596H C3 - View
Brassica rapa BraA01t01240Z A01 + View
Brassica rapa BraA03t14362Z A03 + View
Brassica rapa BraA08t33485Z A08 - View
Beta vulgaris EL10Ac8g20342 PTHR23081//PTHR23081:SF7 - RNA POLYMERASE II CTD PHOSPHATASE // RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 Chr8_EL10_PGA_scaffold4 + View
Camellia sinensis var. sinensis CSS0012849 unnamed protein product [Coffea canephora] Chr8 + View
Cannabis sativa CANSAT35G1545 NC_044378.1 + View
Cicer arietinum L. Ca_18528_v3 Ca_LG6_v3 + View
Corylus avellana Haze_06503 Similar to CPL1: RNA polymerase II C-terminal domain phosphatase-like 1 (Arabidopsis thaliana OX%3D3702) 2 - View
Coffea canephora Cc02_g13040 RNA polymerase II C-terminal domain phosphatase-like 1 chr2 + View
Citrus clementina Ciclev10014168m.g scaffold_2 + View
Carpinus fangiana Cfa000412 Cfa01 + View
Carya illinoinensis CiPaw.10G046800 K18998 - RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] (CPL1_2) Chr10 + View
Carya illinoinensis CiPaw.09G057000 PTHR23081:SF7 - RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 Chr09 + View
Citrullus lanatus ClCG01G022810 RNA polymerase II C-terminal domain phosphatase-like 1 CG_Chr01 + View
Cucumis melo MELO3C007299.2 RNA polymerase II C-terminal domain phosphatase-like 1 chr08 - View
Carica papaya Cpa.g.sc27.71 supercontig_27 - View
Chenopodium quinoa AUR62016975 CPL1: RNA polymerase II C-terminal domain phosphatase-like 1 C_Quinoa_Scaffold_3787 + View
Chenopodium quinoa AUR62014788 CPL1: RNA polymerase II C-terminal domain phosphatase-like 1 C_Quinoa_Scaffold_2947 + View
Capsella rubella Carub.0007s1974 PTHR23081//PTHR23081:SF7 - RNA POLYMERASE II CTD PHOSPHATASE // RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 scaffold_7 - View
Cucumis sativus L. CsaV3_6G049980 RNA polymerase II C-terminal domain phosphatase-like 1 chr6 + View
Daucus carota DCAR_028109 hypothetical protein DCARv2_Chr8 + View
Davidia involucrata Dinv07534 GWHABJS00000020 - View
Durio zibethinus Duzib160G0447 NW_019168015.1 - View
Durio zibethinus Duzib235G0094 NW_019167982.1 - View
Erigeron canadensis ECA236G0114 Conyza_canadensis_scaffold:3 - View
Erythranthe guttata Migut.H01509 scaffold_8 + View
Eutrema salsugineum Thhalv10024324m.g scaffold_1 - View
Fragaria x ananassa FAN16G1429 PTHR23081//PTHR23081:SF7 - RNA POLYMERASE II CTD PHOSPHATASE // RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 Fvb3-3 + View
Fragaria x ananassa FAN11G2695 PTHR23081//PTHR23081:SF7 - RNA POLYMERASE II CTD PHOSPHATASE // RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 Fvb3-4 - View
Fragaria x ananassa FAN25G0477 PTHR23081:SF7 - RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 Fvb3-1 - View
Gossypium hirsutum Gohir.D06G211100 PTHR23081//PTHR23081:SF7 - RNA POLYMERASE II CTD PHOSPHATASE // RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 D06 - View
Gossypium hirsutum Gohir.A10G023900 K18998 - RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] (CPL1_2) A10 + View
Gossypium hirsutum Gohir.A06G210101 PTHR23081//PTHR23081:SF7 - RNA POLYMERASE II CTD PHOSPHATASE // RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 A06 - View
Gossypium hirsutum Gohir.D10G024600 K18998 - RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] (CPL1_2) D10 + View
Glycine max Glyma.13G241400 K18998 - RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] (CPL1_2) Gm13 - View
Glycine max Glyma.13G181700 K18998 - RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] (CPL1_2) Gm13 - View
Glycine max Glyma.15G072000 K18998 - RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] (CPL1_2) Gm15 + View
Gossypium raimondii Gorai.010G255100 Chr10 + View
Gossypium raimondii Gorai.011G025900 Chr11 + View
Helianthus annuus HanXRQChr04g0124171 Probable C-terminal domain phosphatase-like 1 HanXRQChr04 - View
Lupinus albus Lalb_Chr16g0383611 K18998 - RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] (CPL1_2) Lalb_Chr16 + View
Lupinus albus Lalb_Chr05g0218371 K18998 - RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] (CPL1_2) Lalb_Chr05 + View
Lupinus albus Lalb_Chr20g0122001 K18998 - RNA polymerase II C-terminal domain phosphatase-like 1/2 [EC:3.1.3.16] (CPL1_2) Lalb_Chr20 - View
Lotus japonicus Lj4g0027648 PTHR23081//PTHR23081:SF7 - RNA POLYMERASE II CTD PHOSPHATASE // RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 chr4 - View
Lonicera japonica Lj2C286T11 GWHAAZE00000002 + View
Lactuca sativa Lsat_1_v5_gn_7_19061 Lsat_1_v8_lg_7 + View
Malus domestica MD10G1297000 C-terminal domain phosphatase-like 1 Chr10 - View
Malus domestica MD05G1316500 C-terminal domain phosphatase-like 1 Chr05 - View
Manihot esculenta Manes.17G043100 Chromosome17 + View
Manihot esculenta Manes.16G025300 Chromosome16 + View
Medicago truncatula Medtr4g089000 carboxy-terminal domain phosphatase-like protein, putative chr4 - View
Olea europaea Oeu043701.2 chr19 + View
Olea europaea Oeu014699.1 chr13 + View
Punica granatum PGR042G1575 NC_045130.1 - View
Prunus persica Prupe.4G043500 PTHR23081:SF7 - RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 Pp04 + View
Populus trichocarpa Potri.004G040000 PTHR23081//PTHR23081:SF7 - RNA POLYMERASE II CTD PHOSPHATASE // RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 Chr04 + View
Populus trichocarpa Potri.011G049400 PTHR23081//PTHR23081:SF7 - RNA POLYMERASE II CTD PHOSPHATASE // RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 Chr11 + View
Phaseolus vulgaris Phvul.002G226900 PTHR23081:SF7 - RNA POLYMERASE II C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1 Chr02 + View
Quercus lobata QL05p039486 5 + View
Rosa chinensis RcHm_v2.0_Chr5g0007991 RcHm_v2.0_Chr5 + View
Striga asiatica SGA_v2.0_scaffold7G03978 scaffold7 - View
Salvia bowleyana SalBow8G5259 GWHASIU00000004 - View
Salix brachista Sabra11G0033900 GWHAAZH00000011 + View
Simmondsia chinensis Sc17g0006300 GWHAASQ00000017 - View
Solanum lycopersicum Solyc02g078550.3 RNA polymerase II C-terminal domain phosphatase-like 1 (AHRD V3.3 *** A0A2G3D6D3_CAPCH) SL4.0ch02 - View
Solanum pennellii Sopen02g023400 encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | C-terminal domain phosphatase-like 1 (CPL1) | FUNCTIONS IN: double-stranded RNA binding, phosphatase activity, nucleotide phosphatase activity | INVOLVED IN: abscisic acid mediated signaling pathway, negative regulation of transcription, response to abiotic stimulus | LOCATED IN: intracellular | CONTAINS InterPro DOMAIN/s: Double-stranded RNA-binding , NLI interacting factor | BEST Arabidopsis thaliana protein match is: carboxyl-terminal domain (ctd) phosphatase-like 2 Spenn-ch02 - View
Solanum tuberosum PGSC0003DMG400022380 Double-stranded RNA binding protein ST4.03ch02 - View
Selenicereus undatus Hund21246 Scaffold_33680 + View
Trochodendron aralioides TAR627G0551 group6 - View
Theobroma cacao Thecc.06G191200 C-terminal domain phosphatase-like 1 Chromosome_6 - View
Tarenaya hassleriana THA.LOC104806283 RNA polymerase II C-terminal domain phosphatase-like 1 isoform X1 NW_010962392.1 + View
Trifolium pratense TPR.G11981 Tp57577_TGAC_v2_LG3 - View
Tripterygium wilfordii TWI63G0661 NC_052240.1 + View
Tripterygium wilfordii TWI38G1276 NC_052252.1 + View
Utricularia gibba unitig_26.g9370 unitig_26 + View
Vaccinium macrocarpon vmacro15893 Similar to CPL1: RNA polymerase II C-terminal domain phosphatase-like 1 (Arabidopsis thaliana OX%3D3702) chr4_Vaccinium_macrocarpon_Stevens_v1 - View